Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Cobalamin - Rhodobacterales

Properties
Regulator type: RNA regulatory element
Name: Cobalamin
RFAM: RF00174
Regulation mode:
Biological process: Cobalamin biosynthesis
Effector: Adenosylcobalamin
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 20 6
Paracoccus denitrificans PD1222 39 10
Jannaschia sp. CCS1 12 2
Rhodobacterales bacterium HTCC2654 2 1
Oceanicola granulosus HTCC2516 2 1
Loktanella vestfoldensis SKA53 2 1
Oceanicola batsensis HTCC2597 4 1
Roseovarius nubinhibens ISM 14 4
Roseovarius sp. 217 4 2
Sulfitobacter sp. EE-36 13 4
Silicibacter TM1040 19 6
Silicibacter pomeroyi DSS-3 11 3
Roseobacter sp. MED193 14 4
Hyphomonas neptunium ATCC 15444 10 2
Oceanicaulis alexandrii HTCC2633 4 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
btuB
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -326
score = 129.12
sequence = TATTGAGGAACGGCT...

Gene: RSP_2402: Outer membrane vitamin B12 receptor BtuB
*2
Paracoccus denitrificans PD1222

Site:
position = -347
score = 131.2
sequence = GCCATGAGGGCCGAG...

Gene: Pden_1368: Outer membrane vitamin B12 receptor BtuB

Site:
position = -349
score = 101.88
sequence = CAATGCGGGGCCGCT...

Gene: Pden_4382: Outer membrane vitamin B12 receptor BtuB
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
*2
Hyphomonas neptunium ATCC 15444

Site:
position = -355
score = 140.25
sequence = CATCAACCCCATCAG...

Gene: HNE_1514: Outer membrane vitamin B12 receptor BtuB

Site:
position = -248
score = 112.13
sequence = CGCCGCCTCACGCAA...

Gene: HNE_1142: Outer membrane vitamin B12 receptor BtuB
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -352
score = 110.46
sequence = ACACCGACATACGCG...

Gene: OA2633_11725: Outer membrane vitamin B12 receptor BtuB
Outer membrane vitamin B12 receptor BtuB
btuF
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2403: Vitamin B12 ABC transporter, B12-binding component BtuF
 2
Paracoccus denitrificans PD1222

Gene: Pden_1367: Vitamin B12 ABC transporter, B12-binding component BtuF

Gene: Pden_4383: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_11354: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 2
Hyphomonas neptunium ATCC 15444

Gene: HNE_1515: Vitamin B12 ABC transporter, B12-binding component BtuF

Gene: HNE_1143: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_11730: Vitamin B12 ABC transporter, B12-binding component BtuF
Vitamin B12 ABC transporter, B12-binding component BtuF
btuC
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2404: Vitamin B12 ABC transporter, permease component BtuC
 
Paracoccus denitrificans PD1222

Gene: Pden_4384: Vitamin B12 ABC transporter, permease component BtuC
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_17252: Vitamin B12 ABC transporter, permease component BtuC
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 2
Hyphomonas neptunium ATCC 15444

Gene: HNE_1516: Vitamin B12 ABC transporter, permease component BtuC

Gene: HNE_1144: Vitamin B12 ABC transporter, permease component BtuC
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_11735: Vitamin B12 ABC transporter, permease component BtuC
Vitamin B12 ABC transporter, permease component BtuC
btuD
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2405: Vitamin B12 ABC transporter, ATPase component BtuD
 
Paracoccus denitrificans PD1222

Gene: Pden_4385: Vitamin B12 ABC transporter, ATPase component BtuD
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_17247: Vitamin B12 ABC transporter, ATPase component BtuD
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 2
Hyphomonas neptunium ATCC 15444

Gene: HNE_1517: Vitamin B12 ABC transporter, ATPase component BtuD

Gene: HNE_1145: Vitamin B12 ABC transporter, ATPase component BtuD
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_11740: Vitamin B12 ABC transporter, ATPase component BtuD
Vitamin B12 ABC transporter, ATPase component BtuD
cbiB
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0430: Adenosylcobinamide-phosphate synthase
 
Paracoccus denitrificans PD1222

Gene: Pden_3631: Adenosylcobinamide-phosphate synthase
 
Jannaschia sp. CCS1

Gene: Jann_0370: Adenosylcobinamide-phosphate synthase
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_11358: Adenosylcobinamide-phosphate synthase
 
Oceanicola granulosus HTCC2516

Gene: OG2516_10811: Adenosylcobinamide-phosphate synthase
 
Loktanella vestfoldensis SKA53

Gene: SKA53_10054: Adenosylcobinamide-phosphate synthase
 
Oceanicola batsensis HTCC2597

Gene: OB2597_10279: Adenosylcobinamide-phosphate synthase
 
Roseovarius nubinhibens ISM

Gene: ISM_13690: Adenosylcobinamide-phosphate synthase
 
Roseovarius sp. 217

Gene: ROS217_22072: Adenosylcobinamide-phosphate synthase
 
Sulfitobacter sp. EE-36

Gene: EE36_11344: Adenosylcobinamide-phosphate synthase
 
Silicibacter TM1040

Gene: TM1040_2585: Adenosylcobinamide-phosphate synthase
 
Silicibacter pomeroyi DSS-3

Gene: SPO3225: Adenosylcobinamide-phosphate synthase
 
Roseobacter sp. MED193

Gene: MED193_16272: Adenosylcobinamide-phosphate synthase
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_1519: Adenosylcobinamide-phosphate synthase
 
Oceanicaulis alexandrii HTCC2633
Adenosylcobinamide-phosphate synthase
cobD
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0789: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Paracoccus denitrificans PD1222

Gene: Pden_2200: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Jannaschia sp. CCS1

Gene: Jann_0369: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_11353: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_10806: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_10049: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_10274: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Roseovarius nubinhibens ISM

Gene: ISM_13695: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Roseovarius sp. 217

Gene: ROS217_22067: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Sulfitobacter sp. EE-36

Gene: EE36_11349: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Silicibacter TM1040

Gene: TM1040_2584: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Silicibacter pomeroyi DSS-3

Gene: SPO3224: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Roseobacter sp. MED193

Gene: MED193_16277: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_1520: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Oceanicaulis alexandrii HTCC2633
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
cbiZ
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2406: Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
 
Paracoccus denitrificans PD1222

Gene: Pden_4761: Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
COG3313
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_1366: COG3313: Predicted Fe-S protein
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
COG3313: Predicted Fe-S protein
RSP_0787
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -293
score = 107.7
sequence = CGGAAGGTGCGGGCG...

Gene: RSP_0787: hypothetical protein
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -308
score = 125.5
sequence = GCGTAGCATCCAGAC...

Gene: TM1040_0168: hypothetical protein
*
Silicibacter pomeroyi DSS-3

Site:
position = -251
score = 120.63
sequence = GCTACCGCTGGGTCG...

Gene: SPO3547: hypothetical protein
*
Roseobacter sp. MED193

Site:
position = -441
score = 123.16
sequence = ATAGCCGTGTAACGG...

Gene: MED193_11852: hypothetical protein
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
pduX
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0788: hypothetical protein
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_11339: hypothetical protein
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
 
CRON 2.
cfrX
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -292
score = 75.63
sequence = ACCACTTCCGGCGCG...

Gene: RSP_2829: Predicted metal-binding protein
*2
Paracoccus denitrificans PD1222

Site:
position = -277
score = 85.19
sequence = CACAGACATGGGGCG...

Gene: Pden_2530: Predicted metal-binding protein

Gene: Pden_2543: Predicted metal-binding protein
*
Jannaschia sp. CCS1

Site:
position = -221
score = 141.54
sequence = TGAACAGGGTCACGG...

Gene: Jann_2934: Predicted metal-binding protein
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_11348: Predicted metal-binding protein
 
Oceanicola granulosus HTCC2516

Gene: OG2516_10801: Predicted metal-binding protein
 
Loktanella vestfoldensis SKA53

Gene: SKA53_10044: Predicted metal-binding protein
 
Oceanicola batsensis HTCC2597
*
Roseovarius nubinhibens ISM

Site:
position = -321
score = 127.99
sequence = GCATTGTCGCCCCTG...

Gene: ISM_12600: Predicted metal-binding protein
 
Roseovarius sp. 217

Gene: ROS217_22062: Predicted metal-binding protein
*
Sulfitobacter sp. EE-36

Site:
position = -311
score = 88.94
sequence = AATGCAGGGCGTATG...

Gene: EE36_05358: Predicted metal-binding protein
*2
Silicibacter TM1040

Site:
position = -336
score = 77.76
sequence = CGCAAGGAAATTTCG...

Gene: TM1040_2208: Predicted metal-binding protein

Gene: TM1040_2221: Predicted metal-binding protein
*
Silicibacter pomeroyi DSS-3

Site:
position = -292
score = 81.78
sequence = CGCATGTCCGCCCTG...

Gene: SPO2861: Predicted metal-binding protein
*
Roseobacter sp. MED193

Site:
position = -216
score = 93.53
sequence = GCGCAAGGGGGTTTT...

Gene: MED193_19614: Predicted metal-binding protein
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2170: Predicted metal-binding protein
 
Oceanicaulis alexandrii HTCC2633
Predicted metal-binding protein
cobW
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2828: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Paracoccus denitrificans PD1222

Gene: Pden_2531: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Jannaschia sp. CCS1

Gene: Jann_2933: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_11398: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Oceanicola granulosus HTCC2516

Gene: OG2516_10831: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Loktanella vestfoldensis SKA53

Gene: SKA53_10074: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Oceanicola batsensis HTCC2597

Gene: OB2597_10309: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Roseovarius nubinhibens ISM

Gene: ISM_12605: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Roseovarius sp. 217

Gene: ROS217_08014: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Sulfitobacter sp. EE-36

Gene: EE36_05363: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Silicibacter TM1040

Gene: TM1040_2209: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Silicibacter pomeroyi DSS-3

Gene: SPO2862: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Roseobacter sp. MED193

Gene: MED193_19609: CobW GTPase involved in cobalt insertion for B12 biosynthesis
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
CobW GTPase involved in cobalt insertion for B12 biosynthesis
engA
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_2932: hypothetical protein
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
GTP-binding protein EngA
cobN
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2827: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Paracoccus denitrificans PD1222

Gene: Pden_2532: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Jannaschia sp. CCS1

Gene: Jann_2931: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_11408: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Oceanicola granulosus HTCC2516

Gene: OG2516_10846: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Loktanella vestfoldensis SKA53

Gene: SKA53_10089: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Oceanicola batsensis HTCC2597

Gene: OB2597_10319: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Roseovarius nubinhibens ISM

Gene: ISM_12610: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Roseovarius sp. 217

Gene: ROS217_08029: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Sulfitobacter sp. EE-36

Gene: EE36_05368: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Silicibacter TM1040

Gene: TM1040_2210: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Silicibacter pomeroyi DSS-3

Gene: SPO2863: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Roseobacter sp. MED193

Gene: MED193_19604: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
CobN component of cobalt chelatase involved in B12 biosynthesis
cobG
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2533: Cobalamin biosynthesis protein CobG
 
Jannaschia sp. CCS1

Gene: Jann_2930: Cobalamin biosynthesis protein CobG
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_12615: Cobalamin biosynthesis protein CobG
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_05373: Cobalamin biosynthesis protein CobG
 
Silicibacter TM1040

Gene: TM1040_2211: Cobalamin biosynthesis protein CobG
 
Silicibacter pomeroyi DSS-3

Gene: SPO2864: Cobalamin biosynthesis protein CobG
 
Roseobacter sp. MED193

Gene: MED193_19599: Cobalamin biosynthesis protein CobG
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Cobalamin biosynthesis protein CobG
cbiC
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_6217: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Paracoccus denitrificans PD1222

Gene: Pden_2534: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Jannaschia sp. CCS1

Gene: Jann_2929: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_16306: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_09118: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_10019: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_10249: Cobalamin biosynthesis protein CobG / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Roseovarius nubinhibens ISM

Gene: ISM_12620: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Roseovarius sp. 217

Gene: ROS217_13496: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Sulfitobacter sp. EE-36

Gene: EE36_05378: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Silicibacter TM1040

Gene: TM1040_2212: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2865: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Roseobacter sp. MED193

Gene: MED193_19594: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
cbiL
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2826: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Paracoccus denitrificans PD1222

Gene: Pden_2535: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Jannaschia sp. CCS1

Gene: Jann_2928: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_16316: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_09108: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_10009: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_10239: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Roseovarius nubinhibens ISM

Gene: ISM_12625: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Roseovarius sp. 217

Gene: ROS217_13506: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Sulfitobacter sp. EE-36

Gene: EE36_05383: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Silicibacter TM1040

Gene: TM1040_2213: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2866: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Roseobacter sp. MED193

Gene: MED193_19589: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
cbiH
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2824: Cobalt-precorrin-3b C17-methyltransferase
 
Paracoccus denitrificans PD1222

Gene: Pden_2536: Cobalt-precorrin-3b C17-methyltransferase
 
Jannaschia sp. CCS1

Gene: Jann_2927: Cobalt-precorrin-3b C17-methyltransferase
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_12630: Cobalt-precorrin-3b C17-methyltransferase
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_05388: Cobalt-precorrin-3b C17-methyltransferase
 
Silicibacter TM1040

Gene: TM1040_2214: Cobalt-precorrin-3b C17-methyltransferase
 
Silicibacter pomeroyi DSS-3

Gene: SPO2867: Cobalt-precorrin-3b C17-methyltransferase
 
Roseobacter sp. MED193

Gene: MED193_19584: Cobalt-precorrin-3b C17-methyltransferase
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Cobalt-precorrin-3b C17-methyltransferase
cbtC
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -275
score = 109.1
sequence = TGTCACGCCGGGCTA...

Gene: RSP_3186: Predicted cobalt transporter CbtC
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
*
Oceanicola batsensis HTCC2597

Site:
position = -244
score = 106.7
sequence = GCACAACCGAAAGGC...

Gene: OB2597_10304: Predicted cobalt transporter CbtC
*
Roseovarius nubinhibens ISM

Site:
position = -235
score = 117.47
sequence = ATCTCCTTCCATTCG...

Gene: ISM_12665: Predicted cobalt transporter CbtC
 
Roseovarius sp. 217
*
Sulfitobacter sp. EE-36

Site:
position = -288
score = 110.69
sequence = GACCACCTATTCCGG...

Gene: EE36_05423: Predicted cobalt transporter CbtC
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
*
Roseobacter sp. MED193

Site:
position = -280
score = 126.33
sequence = AGAGCAGTGACCTAT...

Gene: MED193_19549: Predicted cobalt transporter CbtC
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Predicted cobalt transporter CbtC
RSP_2081
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_11403: Histone acetyltransferase HPA2 and related acetyltransferases
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_10314: Histone acetyltransferase HPA2 and related acetyltransferases
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Histone acetyltransferase HPA2 and related acetyltransferases
cobF
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2819: Precorrin-6A synthase (EC 2.1.1.152)
 
Paracoccus denitrificans PD1222

Gene: Pden_2542: Precorrin-6A synthase (EC 2.1.1.152)
 
Jannaschia sp. CCS1

Gene: Jann_2920: Precorrin-6A synthase (EC 2.1.1.152)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_13940: Precorrin-6A synthase (EC 2.1.1.152)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_12670: Precorrin-6A synthase (EC 2.1.1.152)
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_05428: Precorrin-6A synthase (EC 2.1.1.152)
 
Silicibacter TM1040

Gene: TM1040_2224: Precorrin-6A synthase (EC 2.1.1.152)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2874: Precorrin-6A synthase (EC 2.1.1.152)
 
Roseobacter sp. MED193

Gene: MED193_19544: Precorrin-6A synthase (EC 2.1.1.152)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Precorrin-6A synthase (EC 2.1.1.152)
hupE
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
*
Oceanicola granulosus HTCC2516

Site:
position = -305
score = 108.97
sequence = CACAAAGATCCCCGC...

Gene: OG2516_10826: HupE-UreJ family cobalt transporter
*
Loktanella vestfoldensis SKA53

Site:
position = -323
score = 105.97
sequence = GCACAACATGACGGC...

Gene: SKA53_10069: HupE-UreJ family cobalt transporter
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
HupE-UreJ family cobalt transporter
cbiA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_3185: Cobyrinic acid A,C-diamide synthase
 
Paracoccus denitrificans PD1222

Gene: Pden_2541: Cobyrinic acid A,C-diamide synthase
 
Jannaschia sp. CCS1

Gene: Jann_2922: Cobyrinic acid A,C-diamide synthase
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_01775: Cobyrinic acid A,C-diamide synthase
 
Oceanicola granulosus HTCC2516

Gene: OG2516_03595: Cobyrinic acid A,C-diamide synthase
 
Loktanella vestfoldensis SKA53

Gene: SKA53_03151: Cobyrinic acid A,C-diamide synthase
 
Oceanicola batsensis HTCC2597

Gene: OB2597_04415: Cobyrinic acid A,C-diamide synthase
 
Roseovarius nubinhibens ISM

Gene: ISM_12655: Cobyrinic acid A,C-diamide synthase
 
Roseovarius sp. 217

Gene: ROS217_17927: Cobyrinic acid A,C-diamide synthase
 
Sulfitobacter sp. EE-36

Gene: EE36_05413: Cobyrinic acid A,C-diamide synthase
 
Silicibacter TM1040

Gene: TM1040_2219: Cobyrinic acid A,C-diamide synthase
 
Silicibacter pomeroyi DSS-3

Gene: SPO2872: Cobyrinic acid A,C-diamide synthase
 
Roseobacter sp. MED193

Gene: MED193_19559: Cobyrinic acid A,C-diamide synthase
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Cobyrinic acid A,C-diamide synthase
 
CRON 3.
btuF
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -373
score = 100.61
sequence = CGGCTACTCAATCCT...

Gene: RSP_3392: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
*2
Paracoccus denitrificans PD1222

Site:
position = -322
score = 101.5
sequence = TACCAAGTCGCTGCA...

Gene: Pden_2980: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component

Site:
position = -293
score = 104.14
sequence = GCGCTATGGCGGAGT...

Gene: Pden_1362: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
*
Roseovarius nubinhibens ISM

Site:
position = -322
score = 109.36
sequence = CGGGTGTCACTGCGG...

Gene: ISM_07745: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
 
Roseovarius sp. 217
*
Sulfitobacter sp. EE-36

Site:
position = -344
score = 118.92
sequence = CTGTCATCGAAACCG...

Gene: EE36_12323: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
*
Roseobacter sp. MED193

Site:
position = -303
score = 111.96
sequence = TCTAAACGGCAAGAG...

Gene: MED193_18509: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
btuC
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_3391: ABC transporter (iron.B12.siderophore.hemin) , permease component
 2
Paracoccus denitrificans PD1222

Gene: Pden_2981: ABC transporter (iron.B12.siderophore.hemin) , permease component

Gene: Pden_1361: ABC transporter (iron.B12.siderophore.hemin) , permease component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_07740: ABC transporter (iron.B12.siderophore.hemin) , permease component
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_12318: ABC transporter (iron.B12.siderophore.hemin) , permease component
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_18514: ABC transporter (iron.B12.siderophore.hemin) , permease component
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC transporter (iron.B12.siderophore.hemin) , permease component
btuD
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_3390: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
 2
Paracoccus denitrificans PD1222

Gene: Pden_2982: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component

Gene: Pden_1360: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_07735: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_12313: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_18519: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
petE
 
Rhodobacter sphaeroides 2.4.1
 2
Paracoccus denitrificans PD1222

Gene: Pden_2983: Pseudoazurin precursor

Gene: Pden_1359: Pseudoazurin precursor
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_07730: Pseudoazurin precursor
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_18524: Pseudoazurin precursor
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Pseudoazurin precursor
 
CRON 4.
cbtB
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -241
score = 133.56
sequence = TAACATATGCGTGTA...

Gene: Pden_2524: Putative cobalt transporter, subunit CbtB
 
Jannaschia sp. CCS1
*
Rhodobacterales bacterium HTCC2654

Site:
position = -238
score = 92.63
sequence = CCACAAGGATAAGGC...

Gene: RB2654_11383: Putative cobalt transporter, subunit CbtB
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -256
score = 111.32
sequence = GCATACGAGAGTGGC...

Gene: ROS217_07994: Putative cobalt transporter, subunit CbtB
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
*
Silicibacter pomeroyi DSS-3

Site:
position = -222
score = 119.05
sequence = GCTAAATGAAGGGGT...

Gene: SPO2875: Putative cobalt transporter, subunit CbtB
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Putative cobalt transporter, subunit CbtB
cbtA
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2525: Predicted cobalt transporter CbtA
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_11388: Predicted cobalt transporter CbtA
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_07999: Predicted cobalt transporter CbtA
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -352
score = 112.77
sequence = CATTGTCGACGGCAT...

Gene: TM1040_2222: Predicted cobalt transporter CbtA
 
Silicibacter pomeroyi DSS-3

Gene: SPO2876: Predicted cobalt transporter CbtA
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Predicted cobalt transporter CbtA
Pden_2526
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2526: hypothetical protein
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_08004: hypothetical protein
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_2223: hypothetical protein
 
Silicibacter pomeroyi DSS-3

Gene: SPO2877: hypothetical protein
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
bluB
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -223
score = 92.21
sequence = CTTTGTGGCAGGGGT...

Gene: RSP_3218: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
 
Paracoccus denitrificans PD1222

Gene: Pden_2527: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_08825: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
 
Roseovarius sp. 217

Gene: ROS217_08499: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
*
Sulfitobacter sp. EE-36

Site:
position = -227
score = 104.56
sequence = GCCCAATGGCCGGGT...

Gene: EE36_10479: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
 
Silicibacter TM1040

Gene: TM1040_2608: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
 
Silicibacter pomeroyi DSS-3

Gene: SPO3254: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
 
Roseobacter sp. MED193

Gene: MED193_16122: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
 
CRON 5.
cbiW
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
*
Jannaschia sp. CCS1

Site:
position = -273
score = 140.25
sequence = CTGAAATCAAACTGG...

Gene: Jann_2250: hypothetical protein
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -302
score = 134.44
sequence = CGCATGAGAGGGGCG...

Gene: TM1040_2933: hypothetical protein
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
btuF
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_2249: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_2934: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
btuC
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_2248: ABC transporter (iron.B12.siderophore.hemin) , permease component
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_2935: ABC transporter (iron.B12.siderophore.hemin) , permease component
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC transporter (iron.B12.siderophore.hemin) , permease component
btuD
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_2247: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_2936: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
 
CRON 6.
nrdH
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -284
score = 121.41
sequence = CTAACTGCAACGGTC...

Gene: Pden_4375: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -295
score = 121.71
sequence = ATCAATATCGTGTTG...

Gene: TM1040_0521: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
nrdI
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4376: Ribonucleotide reduction protein NrdI
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_0520: Ribonucleotide reduction protein NrdI
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Ribonucleotide reduction protein NrdI
nrdA
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4377: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_0519: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4378: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_0518: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 7.
ISM_13370
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
*
Roseovarius nubinhibens ISM

Site:
position = -341
score = 104.74
sequence = TAGGCTAAAGCTCTC...

Gene: ISM_13370: hypothetical protein
*
Roseovarius sp. 217

Site:
position = -306
score = 107.21
sequence = TAGGCTGATCCTGTC...

Gene: ROS217_16870: hypothetical protein
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
 
CRON 8.
Cseg_1811
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -326
score = 132.3
sequence = TTTTACCGTCAGATC...

Gene: Pden_1354: hypothetical protein
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
metE
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_1355: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
CRON 9.
btuB
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -408
score = 127.92
sequence = CTACACGGTCGGGTG...

Gene: Pden_4827: Outer membrane (iron.B12.siderophore.hemin) receptor
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Outer membrane (iron.B12.siderophore.hemin) receptor
btuD
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4828: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
btuF
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4829: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
btuC
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4830: ABC transporter (iron.B12.siderophore.hemin) , permease component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC transporter (iron.B12.siderophore.hemin) , permease component
 
CRON 10.
nrdD
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -414
score = 119.0
sequence = CCCTATATGTAGGCA...

Gene: Pden_2989: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Pden_2988
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2988: hypothetical protein
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
nrdG
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2987: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
CRON 11.
ardX
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_3978: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
 2
Paracoccus denitrificans PD1222

Gene: Pden_1189: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene: Pden_2832: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_10803: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
 
Oceanicola granulosus HTCC2516

Gene: OG2516_15469: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
 
Loktanella vestfoldensis SKA53

Gene: SKA53_15411: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -338
score = 106.59
sequence = ATACAACTCTGCCCT...

Gene: TM1040_3219: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
frdX
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_3979: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 2
Paracoccus denitrificans PD1222

Gene: Pden_1188: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1

Gene: Pden_2831: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_10798: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Oceanicola granulosus HTCC2516

Gene: OG2516_15464: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Loktanella vestfoldensis SKA53

Gene: SKA53_15406: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3218: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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