Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FatR - Lactobacillaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Toxic fatty acid stress response
Effector: Oleate; Gamma-linolenic acid; Linoleate; Phytanate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334 2 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG 2 1
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1 3 3
Pediococcus pentosaceus ATCC 25745
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF06100
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0281: Predicted oxidoreductase
 
Lactobacillus casei ATCC 334

Gene: LSEI_0416: Predicted oxidoreductase
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0139: Predicted oxidoreductase
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00503: Predicted oxidoreductase
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0235: Predicted oxidoreductase
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1641: Predicted oxidoreductase
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
*
Oenococcus oeni PSU-1

Site:
position = -40
score = 6.44604
sequence = GAATGAATATTCATTC

Gene: OEOE_1715: Predicted oxidoreductase
 
Pediococcus pentosaceus ATCC 25745
Predicted oxidoreductase
 
CRON 2.
fatR
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
*
Lactobacillus casei ATCC 334

Site:
position = -29
score = 6.44604
sequence = GAATGAACGTTCATTC

Gene: LSEI_0061: Predicted transport transcriptional regulator FatR, TetR family
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus rhamnosus GG

Site:
position = -33
score = 6.44604
sequence = GAATGAACGTTCATTC

Gene: LGG_00069: Predicted transport transcriptional regulator FatR, TetR family
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
*
Oenococcus oeni PSU-1

Site:
position = -33
score = 6.21124
sequence = GAATGAATAATCATTC

Gene: OEOE_0179: Predicted transport transcriptional regulator FatR, TetR family
 
Pediococcus pentosaceus ATCC 25745
Predicted transport transcriptional regulator FatR, TetR family
cypB
 
Lactobacillus acidophilus NCFM

Gene: LBA1637: Cytochrome P450 CYP102A3
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0758: Cytochrome P450 CYP102A3
 
Lactobacillus casei ATCC 334

Gene: LSEI_0060: Cytochrome P450 CYP102A3
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1757: Cytochrome P450 CYP102A3
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1741: Cytochrome P450 CYP102A3
 
Lactobacillus johnsonii NCC 533

Gene: LJ0667: Cytochrome P450 CYP102A3
 
Lactobacillus plantarum WCFS1

Gene: lp_0295: Cytochrome P450 CYP102A3
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00068: Cytochrome P450 CYP102A3
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0328: Cytochrome P450 CYP102A3
Cytochrome P450 CYP102A3
 
CRON 3.
COG1511
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1944: Predicted membrane protein
*
Oenococcus oeni PSU-1

Site:
position = -54
score = 6.21124
sequence = GAATGATTGTTCATTC

Gene: OEOE_0180: Predicted membrane protein
 
Pediococcus pentosaceus ATCC 25745
Predicted membrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD