Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Deinococcus-Thermus

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Deinococcus-Thermus
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus deserti VCD115
Deinococcus geothermalis DSM 11300 5 1
Deinococcus radiodurans R1 2 2
Thermus aquaticus Y51MC23
Thermus thermophilus HB27 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdJ
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
*
Deinococcus radiodurans R1

Site:
position = -25
score = 4.61387
sequence = ATACCATCCCTGGTAT

Gene: DR2374: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5060: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
*
Thermus thermophilus HB27

Site:
position = -65
score = 4.60949
sequence = ACCCAACCGGTAGTAG

Gene: TTC1930: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
CRON 2.
achX
 
Deinococcus deserti VCD115
*
Deinococcus geothermalis DSM 11300

Site:
position = -357
score = 5.08293
sequence = ATACAACATTTAGTAT

Gene: Dgeo_1772: Acyl-CoA hydrolase (EC 3.1.2.20)
*
Deinococcus radiodurans R1

Site:
position = -347
score = 4.81235
sequence = GTGCCACCTGTAGTAT

Gene: DRB0106: Acyl-CoA hydrolase (EC 3.1.2.20)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3194: Acyl-CoA hydrolase (EC 3.1.2.20)
*
Thermus thermophilus HB27

Site:
position = -338
score = 5.05212
sequence = ATCCAACCTGTGGTAG

Gene: TTP0160: Acyl-CoA hydrolase (EC 3.1.2.20)
Acyl-CoA hydrolase (EC 3.1.2.20)
nrdI
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1773: Ribonucleotide reduction protein NrdI
 
Deinococcus radiodurans R1

Gene: DRB0107: Ribonucleotide reduction protein NrdI
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Ribonucleotide reduction protein NrdI
nrdE
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1774: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Deinococcus radiodurans R1

Gene: DRB0108: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
nrdF
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1775: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Deinococcus radiodurans R1

Gene: DRB0109: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
trx
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1776: thioredoxin-related protein
 
Deinococcus radiodurans R1

Gene: DRB0110: thioredoxin-related protein
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
thioredoxin-related protein
nrdB
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3195: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Thermus thermophilus HB27

Gene: TTP0161: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
nrdA
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3196: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Thermus thermophilus HB27

Gene: TTP0162: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD