Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DVU0539/DVU0946 - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 30 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfohalobium retbaense DSM 5692 8 4
Desulfomicrobium baculatum DSM 4028 4 1
Desulfovibrio desulfuricans G20 4 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1 8 3
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638 2 1
Desulfovibrio vulgaris Hildenborough 12 4
Desulfovibrio vulgaris str. Miyazaki F 13 4
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
DVU0943
*2
Desulfohalobium retbaense DSM 5692

Site:
position = -401
score = 4.46029
sequence = TGCTAAGCGCGATTGGCA

Site:
position = -292
score = 4.71139
sequence = TGCAATCCCGGCTTAGCA

Site:
position = -268
score = 5.16324
sequence = TGCCAACCGCGGTTGGCA

Site:
position = -32
score = 4.38008
sequence = AGCAAAGACACGTATGCA

Gene: Dret_1220: Uncharacterized membrane protein family UPF0324

Gene: Dret_0966: Uncharacterized membrane protein family UPF0324
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -163
score = 4.05594
sequence = TGTAAACGCGACATTGCA

Site:
position = -182
score = 5.65995
sequence = TGCAAACTCGTGTTTGCA

Gene: Dbac_2656: Uncharacterized membrane protein family UPF0324
*
Desulfovibrio desulfuricans G20

Site:
position = -215
score = 4.79274
sequence = TGGTAACTTTGGTTTGCA

Gene: Dde_0876: Uncharacterized membrane protein family UPF0324
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1033: Uncharacterized membrane protein family UPF0324
*
Desulfovibrio magneticus RS-1

Site:
position = -212
score = 4.48355
sequence = TGACAACTCCAGTTTACA

Gene: DMR_25930: Uncharacterized membrane protein family UPF0324
 2
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00792: Uncharacterized membrane protein family UPF0324

Gene: DESPIG_00941: Uncharacterized membrane protein family UPF0324
*
Desulfovibrio salexigens DSM 2638

Site:
position = -189
score = 4.98388
sequence = TGCAAACTTTGCTTTGCA

Site:
position = -155
score = 3.83343
sequence = TGCAAGCCCAAGTAATCA

Gene: Desal_0416: Uncharacterized membrane protein family UPF0324
*2
Desulfovibrio vulgaris Hildenborough

Site:
position = -196
score = 5.0022
sequence = CGCAAACGCGGGTTTGCG

Site:
position = -172
score = 4.49785
sequence = CGCTAACACAGGTTTACG

Site:
position = -153
score = 5.2449
sequence = TGCAAAGTGATGTTTGCA

Gene: DVU0943: Uncharacterized membrane protein family UPF0324

Site:
position = -195
score = 4.84363
sequence = TGCAAATAAAAGTTTGCA

Site:
position = -172
score = 5.16585
sequence = TGCAATGTCAGGTTTGCA

Site:
position = -153
score = 5.32789
sequence = TGCAAATTGAAGTTTGCA

Gene: DVU2133: Uncharacterized membrane protein family UPF0324
*2
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -238
score = 4.36941
sequence = TGCCTTTTCGAGTTGGCA

Gene: DvMF_2092: Uncharacterized membrane protein family UPF0324

Site:
position = -209
score = 4.53763
sequence = TGCATACCCGCGGAGGCA

Site:
position = -164
score = 5.33253
sequence = TGCAAACTTCAGTTTGCG

Gene: DvMF_1363: Uncharacterized membrane protein family UPF0324
 
Lawsonia intracellularis PHE/MN1-00
Uncharacterized membrane protein family UPF0324
DVU0944
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1219: hypothetical protein
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2655: hypothetical protein
 
Desulfovibrio desulfuricans G20

Gene: Dde_0877: hypothetical protein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1034: hypothetical protein
 
Desulfovibrio magneticus RS-1

Gene: DMR_25940: hypothetical protein
 2
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00793: hypothetical protein

Gene: DESPIG_00940: hypothetical protein
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0415: hypothetical protein
 2
Desulfovibrio vulgaris Hildenborough

Gene: DVU0944: hypothetical protein

Gene: DVU2132: hypothetical protein
 2
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1362: hypothetical protein

Gene: DvMF_2093: hypothetical protein
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
DVU0540
*2
Desulfohalobium retbaense DSM 5692

Site:
position = -78
score = 5.15704
sequence = TGCCAACTCGCGTTTACA

Gene: Dret_0969: integral membrane sensor signal transduction histidine kinase

Site:
position = -484
score = 5.16324
sequence = TGCCAACCGCGGTTGGCA

Site:
position = -460
score = 4.67089
sequence = TGCTAAGCCGGGATTGCA

Site:
position = -351
score = 4.28473
sequence = TGCCAATCGCGCTTAGCA

Gene: Dret_1221: integral membrane sensor signal transduction histidine kinase
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2654: integral membrane sensor signal transduction histidine kinase
 
Desulfovibrio desulfuricans G20

Gene: Dde_0878: integral membrane sensor signal transduction histidine kinase
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
*
Desulfovibrio magneticus RS-1

Site:
position = -39
score = 5.13798
sequence = CGCAAACTCCAGTTAGCA

Gene: DMR_33170: integral membrane sensor signal transduction histidine kinase
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0413: integral membrane sensor signal transduction histidine kinase
*2
Desulfovibrio vulgaris Hildenborough

Gene: DVU0945: integral membrane sensor signal transduction histidine kinase

Site:
position = -166
score = 5.36409
sequence = TGCTAACTCGTGTTAGCA

Gene: DVU0540: integral membrane sensor signal transduction histidine kinase
*3
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1361: integral membrane sensor signal transduction histidine kinase

Site:
position = -175
score = 4.76202
sequence = TGCTAACTCGCGGCAGCA

Gene: DvMF_2602: integral membrane sensor signal transduction histidine kinase

Gene: DvMF_2094: integral membrane sensor signal transduction histidine kinase
 
Lawsonia intracellularis PHE/MN1-00
integral membrane sensor signal transduction histidine kinase
DVU0539
 2
Desulfohalobium retbaense DSM 5692

Gene: Dret_0970: two component, sigma54 specific, transcriptional regulator, Fis family

Gene: Dret_1222: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2653: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio desulfuricans G20

Gene: Dde_0879: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1

Gene: DMR_33180: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0412: two component, sigma54 specific, transcriptional regulator, Fis family
 2
Desulfovibrio vulgaris Hildenborough

Gene: DVU0946: two component, sigma54 specific, transcriptional regulator, Fis family

Gene: DVU0539: two component, sigma54 specific, transcriptional regulator, Fis family
 3
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1360: two component, sigma54 specific, transcriptional regulator, Fis family

Gene: DvMF_2601: two component, sigma54 specific, transcriptional regulator, Fis family

Gene: DvMF_2095: two component, sigma54 specific, transcriptional regulator, Fis family
 
Lawsonia intracellularis PHE/MN1-00
two component, sigma54 specific, transcriptional regulator, Fis family
Dret_0967
*
Desulfohalobium retbaense DSM 5692

Site:
position = -399
score = 5.00065
sequence = TGTAAACGCGAGTTGGCA

Gene: Dret_0967: hypothetical protein
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
 
CRON 2.
DVU0542
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
*
Desulfovibrio magneticus RS-1

Site:
position = -129
score = 5.37588
sequence = TGCTAACTGGAGTTTGCG

Gene: DMR_33160: putative universal stress protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -149
score = 5.37409
sequence = TGCTAACACGAGTTAGCA

Gene: DVU0542: putative universal stress protein
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
putative universal stress protein
DVU0543
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0930: Uncharacterised membrane protein family UPF0324
 
Desulfovibrio magneticus RS-1

Gene: DMR_33150: Uncharacterised membrane protein family UPF0324
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0543: Uncharacterised membrane protein family UPF0324
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -353
score = 4.79632
sequence = TGCTGCCGCGAGTTAGCA

Gene: DvMF_2603: Uncharacterised membrane protein family UPF0324
 
Lawsonia intracellularis PHE/MN1-00
Uncharacterised membrane protein family UPF0324
Dbac_0036
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0931: hypothetical protein
 
Desulfovibrio magneticus RS-1

Gene: DMR_33140: hypothetical protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0544: hypothetical protein
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2604: hypothetical protein
 
Lawsonia intracellularis PHE/MN1-00
protein of unknown function DUF201
Ddes_0932
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0932: hypothetical protein
 
Desulfovibrio magneticus RS-1

Gene: DMR_33130: hypothetical protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0545: hypothetical protein
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2605: hypothetical protein
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD