Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DVU0621 - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process: Nitrate and nitrite respiration
Effector: Nitrite
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfohalobium retbaense DSM 5692
Desulfomicrobium baculatum DSM 4028 4 1
Desulfovibrio desulfuricans G20 9 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 8 2
Desulfovibrio magneticus RS-1
Desulfovibrio piger ATCC 29098 2 1
Desulfovibrio salexigens DSM 2638
Desulfovibrio vulgaris Hildenborough 11 2
Desulfovibrio vulgaris str. Miyazaki F 6 2
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Ddes_0614
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -228
score = 5.50796
sequence = GTCATATTTTTATGAA

Site:
position = -194
score = 4.66495
sequence = GTGATGTTTTTCTCAA

Site:
position = -248
score = 5.28931
sequence = GTCATGTTTTTATGAA

Gene: Ddes_0614: Functional role page for Cytochrome c-type protein TorY
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Functional role page for Cytochrome c-type protein TorY
Ddes_0615
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0615: hypothetical protein
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
Ddes_0616
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0616: nitrate reductase
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
nitrate reductase
Ddes_0617
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0617: hypothetical protein
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
Ddes_0618
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0618: MauM/NapG family ferredoxin-type protein
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
MauM/NapG family ferredoxin-type protein
Ddes_0619
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0619: Polyferredoxin NapH (periplasmic nitrate reductase)
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Polyferredoxin NapH (periplasmic nitrate reductase)
 
CRON 2.
nrfH
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -315
score = 5.74514
sequence = GTCATAATTTTCTGAA

Site:
position = -295
score = 5.52649
sequence = GTCATGTTTATCTGAA

Gene: Ddes_0082: Cytochrome c nitrite reductase, small subunit NrfH
 
Desulfovibrio magneticus RS-1
*
Desulfovibrio piger ATCC 29098

Site:
position = -250
score = 5.77837
sequence = GTCAGATTTTTCGGAA

Site:
position = -229
score = 5.62819
sequence = GTCTTTTTTTTCTGAA

Gene: DESPIG_01831: Cytochrome c nitrite reductase, small subunit NrfH
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -322
score = 6.02896
sequence = GTCATCTTTTTCTGTC

Site:
position = -302
score = 6.20546
sequence = GTCATCTTTTTCTGAC

Gene: DVU0624: Cytochrome c nitrite reductase, small subunit NrfH
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -277
score = 6.06219
sequence = GTCAGATTTTTCTGTC

Gene: DvMF_1491: Cytochrome c nitrite reductase, small subunit NrfH
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI1001: Cytochrome c nitrite reductase, small subunit NrfH
Cytochrome c nitrite reductase, small subunit NrfH
nrfA
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0081: Cytochrome c nitrite reductase, catalytic subunit NrfA
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01830: Cytochrome c nitrite reductase, catalytic subunit NrfA
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0625: Cytochrome c nitrite reductase, catalytic subunit NrfA
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1490: Cytochrome c nitrite reductase, catalytic subunit NrfA
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI1002: Cytochrome c nitrite reductase, catalytic subunit NrfA
Cytochrome c nitrite reductase, catalytic subunit NrfA
 
CRON 3.
por
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1036: pyruvate-ferredoxin oxidoreductase
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -188
score = 5.09507
sequence = GTCTTTTTTTTCAGAC

Gene: Dbac_1044: pyruvate-ferredoxin oxidoreductase
*
Desulfovibrio desulfuricans G20

Site:
position = -387
score = 4.77428
sequence = GTCCTGTTTTTCAGAC

Site:
position = -261
score = 4.87598
sequence = GTCCTTTTTTTCAGAC

Site:
position = -362
score = 5.02616
sequence = GTCCGCTTTTTCAGAC

Gene: Dde_3237: pyruvate-ferredoxin oxidoreductase
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0298: pyruvate-ferredoxin oxidoreductase
 
Desulfovibrio magneticus RS-1

Gene: DMR_20070: pyruvate-ferredoxin oxidoreductase
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02167: pyruvate-ferredoxin oxidoreductase
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -389
score = 4.4018
sequence = ATCCGCTTTTTCAGAC

Site:
position = -350
score = 4.51527
sequence = GTCCACTTTTTCAGAC

Gene: DVU3025: pyruvate-ferredoxin oxidoreductase
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -466
score = 4.63943
sequence = GTCCGGATTTTCGGAC

Gene: DvMF_1860: pyruvate-ferredoxin oxidoreductase
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0278: pyruvate-ferredoxin oxidoreductase
pyruvate-ferredoxin oxidoreductase
lldP
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1039: L-lactate permease
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1045: L-lactate permease
 
Desulfovibrio desulfuricans G20

Gene: Dde_3238: L-lactate permease
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_2169: L-lactate permease
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2573: L-lactate permease
 2
Desulfovibrio vulgaris Hildenborough

Gene: DVU3026: L-lactate permease

Gene: DVU2451: L-lactate permease
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1861: L-lactate permease
 
Lawsonia intracellularis PHE/MN1-00
L-lactate permease
glcD
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1038: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1046: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Desulfovibrio desulfuricans G20

Gene: Dde_3239: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1994: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Desulfovibrio magneticus RS-1

Gene: DMR_20060: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02393: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2572: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3027: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1862: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Lawsonia intracellularis PHE/MN1-00
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcF
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1037: Glycolate oxidase iron-sulfur subunit GlcF
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1047: Glycolate oxidase iron-sulfur subunit GlcF
 
Desulfovibrio desulfuricans G20

Gene: Dde_3240: Glycolate oxidase iron-sulfur subunit GlcF
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1993: Glycolate oxidase iron-sulfur subunit GlcF
 
Desulfovibrio magneticus RS-1

Gene: DMR_20050: Glycolate oxidase iron-sulfur subunit GlcF
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02394: Glycolate oxidase iron-sulfur subunit GlcF
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2571: Glycolate oxidase iron-sulfur subunit GlcF
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3028: Glycolate oxidase iron-sulfur subunit GlcF
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1863: Glycolate oxidase iron-sulfur subunit GlcF
 
Lawsonia intracellularis PHE/MN1-00
Glycolate oxidase iron-sulfur subunit GlcF
pta
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1035: Phosphate acetyltransferase (EC 2.3.1.8)
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1048: Phosphate acetyltransferase (EC 2.3.1.8)
 
Desulfovibrio desulfuricans G20

Gene: Dde_3241: Phosphate acetyltransferase (EC 2.3.1.8)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0297: Phosphate acetyltransferase (EC 2.3.1.8)
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02164: Phosphate acetyltransferase (EC 2.3.1.8)
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2570: Phosphate acetyltransferase (EC 2.3.1.8)
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3029: Phosphate acetyltransferase (EC 2.3.1.8)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1864: Phosphate acetyltransferase (EC 2.3.1.8)
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0279: Phosphate acetyltransferase (EC 2.3.1.8)
Phosphate acetyltransferase (EC 2.3.1.8)
ackA
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1034: Acetate kinase (EC 2.7.2.1)
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1049: Acetate kinase (EC 2.7.2.1)
 
Desulfovibrio desulfuricans G20

Gene: Dde_3242: Acetate kinase (EC 2.7.2.1)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0296: Acetate kinase (EC 2.7.2.1)
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02163: Acetate kinase (EC 2.7.2.1)
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2569: Acetate kinase (EC 2.7.2.1)
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3030: Acetate kinase (EC 2.7.2.1)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1865: Acetate kinase (EC 2.7.2.1)
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0280: Acetate kinase (EC 2.7.2.1)
Acetate kinase (EC 2.7.2.1)
DVU3031
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1033: BioD-like N-terminal domain of phosphotransacetylase
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20

Gene: Dde_3243: BioD-like N-terminal domain of phosphotransacetylase
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1

Gene: DMR_20030: BioD-like N-terminal domain of phosphotransacetylase
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_3044: BioD-like N-terminal domain of phosphotransacetylase
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3031: BioD-like N-terminal domain of phosphotransacetylase
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1866: BioD-like N-terminal domain of phosphotransacetylase
 
Lawsonia intracellularis PHE/MN1-00
BioD-like N-terminal domain of phosphotransacetylase
lldG
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1032: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1728: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
 
Desulfovibrio desulfuricans G20

Gene: Dde_3244: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1992: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
 
Desulfovibrio magneticus RS-1

Gene: DMR_20010: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02395: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2568: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3032: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1867: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
 
Lawsonia intracellularis PHE/MN1-00
Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
lldEF
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1031: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1729: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
 
Desulfovibrio desulfuricans G20

Gene: Dde_3245: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1991: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
 
Desulfovibrio magneticus RS-1

Gene: DMR_20000: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02396: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2567: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3033: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1868: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
 
Lawsonia intracellularis PHE/MN1-00
Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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