Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiaR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: OmpR
Regulation mode: activator
Biological process: Cell wall-active antibiotics stress response
Effector: LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin)
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1 5 1
Bacillus amyloliquefaciens FZB42 6 1
Bacillus cereus ATCC 14579 5 1
Bacillus clausii KSM-K16 5 1
Bacillus halodurans C-125 6 1
Bacillus licheniformis DSM 13 6 1
Bacillus pumilus SAFR-032 6 1
Bacillus subtilis subsp. subtilis str. 168 6 1
Geobacillus kaustophilus HTA426 5 1
Oceanobacillus iheyensis HTE831 5 1
Paenibacillus sp. JDR-2 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
liaI
*
Anoxybacillus flavithermus WK1

Site:
position = -52
score = 5.54119
sequence = ATACGCCTTGAGTCGTAG

Gene: Aflv_0168: Predicted membrane protein LiaI
*
Bacillus amyloliquefaciens FZB42

Site:
position = -99
score = 5.08174
sequence = ATACGACTCCGGTCTGAT

Gene: RBAM_030260: Predicted membrane protein LiaI
*
Bacillus cereus ATCC 14579

Site:
position = -102
score = 4.73632
sequence = CTCGGTCTTAAGTCTGAG

Gene: BC1435: Predicted membrane protein LiaI
*
Bacillus clausii KSM-K16

Site:
position = -113
score = 4.91579
sequence = CTCAGCCTCTAGTCGCAG

Gene: ABC3378: Predicted membrane protein LiaI
*
Bacillus halodurans C-125

Site:
position = -98
score = 5.25959
sequence = CTCAGACTCAAGGCGGAG

Gene: BH1195: Predicted membrane protein LiaI
*
Bacillus licheniformis DSM 13

Site:
position = -99
score = 4.8098
sequence = ATACGACCCTGGTCGTAC

Gene: BLi03497: Predicted membrane protein LiaI
*
Bacillus pumilus SAFR-032

Site:
position = -100
score = 4.56973
sequence = TTACGACTCTGGTCGCAA

Gene: BPUM_2968: Predicted membrane protein LiaI
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -99
score = 5.1555
sequence = ATACGACTCCGGTCTTAT

Gene: BSU33130: Predicted membrane protein LiaI
*
Geobacillus kaustophilus HTA426

Site:
position = -92
score = 5.64989
sequence = ATACGCCTCGAGTCGTAG

Gene: GK0430: Predicted membrane protein LiaI
*
Oceanobacillus iheyensis HTE831

Site:
position = -100
score = 4.7829
sequence = ATACACCTTAAGTCTTAG

Gene: OB2826: Predicted membrane protein LiaI
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1102: Predicted membrane protein LiaI
Predicted membrane protein LiaI
liaH
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0169: Protein LiaH, similar to phage shock protein A
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_030250: Protein LiaH, similar to phage shock protein A
 
Bacillus cereus ATCC 14579

Gene: BC1436: Protein LiaH, similar to phage shock protein A
 
Bacillus clausii KSM-K16

Gene: ABC3377: Protein LiaH, similar to phage shock protein A
 
Bacillus halodurans C-125

Gene: BH1196: Protein LiaH, similar to phage shock protein A
 
Bacillus licheniformis DSM 13

Gene: BLi03496: Protein LiaH, similar to phage shock protein A
 
Bacillus pumilus SAFR-032

Gene: BPUM_2967: Protein LiaH, similar to phage shock protein A
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33120: Protein LiaH, similar to phage shock protein A
 
Geobacillus kaustophilus HTA426

Gene: GK0431: Protein LiaH, similar to phage shock protein A
 
Oceanobacillus iheyensis HTE831

Gene: OB2825: Protein LiaH, similar to phage shock protein A
 2
Paenibacillus sp. JDR-2

Gene: Pjdr2_1103: Protein LiaH, similar to phage shock protein A

Gene: Pjdr2_1105: Protein LiaH, similar to phage shock protein A
Protein LiaH, similar to phage shock protein A
liaG
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_030240: Conserved membrane protein LiaG
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125

Gene: BH1197: Conserved membrane protein LiaG
 
Bacillus licheniformis DSM 13

Gene: BLi03495: Conserved membrane protein LiaG
 
Bacillus pumilus SAFR-032

Gene: BPUM_2966: Conserved membrane protein LiaG
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33110: Conserved membrane protein LiaG
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Conserved membrane protein LiaG
liaF
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0170: Inhibitor of LiaR-dependent gene expression LiaF
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_030230: Inhibitor of LiaR-dependent gene expression LiaF
 
Bacillus cereus ATCC 14579

Gene: BC1437: Inhibitor of LiaR-dependent gene expression LiaF
 
Bacillus clausii KSM-K16

Gene: ABC3376: Inhibitor of LiaR-dependent gene expression LiaF
 
Bacillus halodurans C-125

Gene: BH1198: Inhibitor of LiaR-dependent gene expression LiaF
 
Bacillus licheniformis DSM 13

Gene: BLi03494: Inhibitor of LiaR-dependent gene expression LiaF
 
Bacillus pumilus SAFR-032

Gene: BPUM_2965: Inhibitor of LiaR-dependent gene expression LiaF
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33100: Inhibitor of LiaR-dependent gene expression LiaF
 
Geobacillus kaustophilus HTA426

Gene: GK0432: Inhibitor of LiaR-dependent gene expression LiaF
 
Oceanobacillus iheyensis HTE831

Gene: OB2824: Inhibitor of LiaR-dependent gene expression LiaF
 
Paenibacillus sp. JDR-2
Inhibitor of LiaR-dependent gene expression LiaF
liaS
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0171: Two-component sensor histidine kinase sensing cell wall stress
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_030220: Two-component sensor histidine kinase sensing cell wall stress
 
Bacillus cereus ATCC 14579

Gene: BC1438: Two-component sensor histidine kinase sensing cell wall stress
 
Bacillus clausii KSM-K16

Gene: ABC3375: Two-component sensor histidine kinase sensing cell wall stress
 
Bacillus halodurans C-125

Gene: BH1199: Two-component sensor histidine kinase sensing cell wall stress
 
Bacillus licheniformis DSM 13

Gene: BLi03493: Two-component sensor histidine kinase sensing cell wall stress
 
Bacillus pumilus SAFR-032

Gene: BPUM_2964: Two-component sensor histidine kinase sensing cell wall stress
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33090: Two-component sensor histidine kinase sensing cell wall stress
 
Geobacillus kaustophilus HTA426

Gene: GK0433: Two-component sensor histidine kinase sensing cell wall stress
 
Oceanobacillus iheyensis HTE831

Gene: OB2823: Two-component sensor histidine kinase sensing cell wall stress
 2
Paenibacillus sp. JDR-2

Gene: Pjdr2_4786: Two-component sensor histidine kinase sensing cell wall stress

Gene: Pjdr2_1106: Two-component sensor histidine kinase sensing cell wall stress
Two-component sensor histidine kinase sensing cell wall stress
liaR
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0172: Two component transcriptional regulator, LuxR family
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_030210: Two component transcriptional regulator, LuxR family
 
Bacillus cereus ATCC 14579

Gene: BC1439: Two component transcriptional regulator, LuxR family
 
Bacillus clausii KSM-K16

Gene: ABC3374: Two component transcriptional regulator, LuxR family
 
Bacillus halodurans C-125

Gene: BH1200: Two component transcriptional regulator, LuxR family
 
Bacillus licheniformis DSM 13

Gene: BLi03492: Two component transcriptional regulator, LuxR family
 
Bacillus pumilus SAFR-032

Gene: BPUM_2963: Two component transcriptional regulator, LuxR family
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33080: Two component transcriptional regulator, LuxR family
 
Geobacillus kaustophilus HTA426

Gene: GK0434: Two component transcriptional regulator, LuxR family
 
Oceanobacillus iheyensis HTE831

Gene: OB2822: Two component transcriptional regulator, LuxR family
 2
Paenibacillus sp. JDR-2

Gene: Pjdr2_4785: Two component transcriptional regulator, LuxR family

Gene: Pjdr2_1107: Two component transcriptional regulator, LuxR family
Two component transcriptional regulator, LuxR family
liaIF
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -115
score = 4.81885
sequence = CTCCGTCTCGAGACCGAT

Gene: Pjdr2_4787: Predicted membrane protein LiaI / Inhibitor of LiaR-dependent gene expression LiaF
Predicted membrane protein LiaI / Inhibitor of LiaR-dependent gene expression LiaF
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD