Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Pseudomonadaceae

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 3 1
Pseudomonas entomophila L48 1 1
Pseudomonas putida KT2440 1 1
Pseudomonas syringae pv. tomato str. DC3000 1 1
Pseudomonas fluorescens Pf-5 1 1
Pseudomonas mendocina ymp 3 1
Pseudomonas stutzeri A1501 3 1
Azotobacter vinelandii AvOP 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribE2
*
Pseudomonas aeruginosa PAO1

Site:
position = -347
score = 95.3
sequence = GTAACGTTCTCAGGG...

Gene: PA4055: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Pseudomonas entomophila L48

Gene: PSEEN0589: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Pseudomonas putida KT2440

Gene: PP0515: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO0691: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_5521: Riboflavin synthase alpha chain (EC 2.5.1.9)
*
Pseudomonas mendocina ymp

Site:
position = -282
score = 102.04
sequence = GCAACGTTCTCAGGG...

Gene: Pmen_3856: Riboflavin synthase alpha chain (EC 2.5.1.9)
*
Pseudomonas stutzeri A1501

Site:
position = -269
score = 62.98
sequence = TGAGCACTTCGAGGA...

Gene: PST_0836: Riboflavin synthase alpha chain (EC 2.5.1.9)
*
Azotobacter vinelandii AvOP

Site:
position = -273
score = 97.09
sequence = GACGTTCTCAGGGCG...

Gene: Avin_06730: Riboflavin synthase alpha chain (EC 2.5.1.9)
Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA
 
Pseudomonas aeruginosa PAO1

Gene: PA4054: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Pseudomonas entomophila L48

Gene: PSEEN0590: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Pseudomonas putida KT2440

Gene: PP_0516: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO0692: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_5520: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Pseudomonas mendocina ymp

Gene: Pmen_3855: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Pseudomonas stutzeri A1501

Gene: PST_0837: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Azotobacter vinelandii AvOP

Gene: Avin_06740: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
ribH
 
Pseudomonas aeruginosa PAO1

Gene: PA4053: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Pseudomonas entomophila L48

Gene: PSEEN0591: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Pseudomonas putida KT2440

Gene: PP0517: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO0693: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_5519: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Pseudomonas mendocina ymp

Gene: Pmen_3854: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Pseudomonas stutzeri A1501

Gene: PST_0838: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Azotobacter vinelandii AvOP

Gene: Avin_06750: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
CRON 2.
ribB
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -223
score = 113.53
sequence = CAAGGGTCTTCAGGG...

Gene: PSEEN0609: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Pseudomonas putida KT2440

Site:
position = -223
score = 111.72
sequence = GGTCGGTCTTCAGGG...

Gene: PP0530: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
3,4-dihydroxy-2-butanone 4-phosphate synthase
 
CRON 3.
ribH2
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -301
score = 100.31
sequence = GTAACGTTCTCAGGG...

Gene: PSPTO1839: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
*
Pseudomonas fluorescens Pf-5

Site:
position = -291
score = 104.58
sequence = AACGTTCTCAGGGCG...

Gene: PFL_4508: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD