Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Cobalamin - Vibrionales

Properties
Regulator type: RNA regulatory element
Name: Cobalamin
RFAM: RF00174
Regulation mode:
Biological process: Cobalamin biosynthesis
Effector: Adenosylcobalamin
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 1 1
Vibrio vulnificus CMCP6 3 1
Vibrio harveyi ATCC BAA-1116 1 1
Vibrio parahaemolyticus RIMD 2210633 3 1
Vibrio shilonii AK1 1 1
Vibrio splendidus LGP32 14 2
Vibrio fischeri ES114 6 2
Vibrio salmonicida LFI1238 6 2
Vibrio angustum S14 1 1
Photobacterium profundum SS9 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
btuB
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -246
score = 104.79
sequence = ACTATCAGCGCCAAG...

Gene: VC0156: Outer membrane vitamin B12 receptor BtuB
*
Vibrio vulnificus CMCP6

Site:
position = -249
score = 101.81
sequence = AGTATGCGCTTCAAG...

Gene: VV1_1173: Outer membrane vitamin B12 receptor BtuB
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -260
score = 99.89
sequence = ATAGTATTTGCCCCA...

Gene: VIBHAR_00261: Outer membrane vitamin B12 receptor BtuB
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -260
score = 100.24
sequence = ATAATATTTGCCTCA...

Gene: VP2938: Outer membrane vitamin B12 receptor BtuB
*
Vibrio shilonii AK1

Site:
position = -261
score = 98.9
sequence = TACCATTCCGCCTAG...

Gene: VSAK1_13281: Outer membrane vitamin B12 receptor BtuB
*
Vibrio splendidus LGP32

Site:
position = -244
score = 100.46
sequence = ATACTATTTCCGGCA...

Gene: VS_2998: Outer membrane vitamin B12 receptor BtuB
*
Vibrio fischeri ES114

Site:
position = -265
score = 91.95
sequence = CTACTATTTCGCCCA...

Gene: VF_2435: Outer membrane vitamin B12 receptor BtuB
*
Vibrio salmonicida LFI1238

Site:
position = -277
score = 75.19
sequence = CTACTATTTCGGCCA...

Gene: VSAL_I2886: Outer membrane vitamin B12 receptor BtuB
*
Vibrio angustum S14

Site:
position = -272
score = 56.3
sequence = AGCATCTGCCCTGCG...

Gene: VAS14_23134: Outer membrane vitamin B12 receptor BtuB
*
Photobacterium profundum SS9

Site:
position = -263
score = 61.98
sequence = ACTAGCATCGCAGTG...

Gene: PBPRA3464: Outer membrane vitamin B12 receptor BtuB
Outer membrane vitamin B12 receptor BtuB
COG2102
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV1_1174: Hypothetical amidotransferase related to B12 salvage
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_00257: Hypothetical amidotransferase related to B12 salvage
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP2937: Hypothetical amidotransferase related to B12 salvage
 
Vibrio shilonii AK1

Gene: VSAK1_13291: Hypothetical amidotransferase related to B12 salvage
 
Vibrio splendidus LGP32

Gene: VS_2997: Hypothetical amidotransferase related to B12 salvage
 
Vibrio fischeri ES114

Gene: VF_2434: Hypothetical amidotransferase related to B12 salvage
 
Vibrio salmonicida LFI1238

Gene: VSAL_I2885: Hypothetical amidotransferase related to B12 salvage
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRA3463: Hypothetical amidotransferase related to B12 salvage
Hypothetical amidotransferase related to B12 salvage
COG0796
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC0158: putative glutamate racemase (EC 5.1.1.3)
 
Vibrio vulnificus CMCP6

Gene: VV1_1175: putative glutamate racemase (EC 5.1.1.3)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_00256: putative glutamate racemase (EC 5.1.1.3)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP2936: putative glutamate racemase (EC 5.1.1.3)
 
Vibrio shilonii AK1

Gene: VSAK1_13296: putative glutamate racemase (EC 5.1.1.3)
 
Vibrio splendidus LGP32

Gene: VS_2996: putative glutamate racemase (EC 5.1.1.3)
 
Vibrio fischeri ES114

Gene: VF_2433: putative glutamate racemase (EC 5.1.1.3)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I2884: putative glutamate racemase (EC 5.1.1.3)
 
Vibrio angustum S14

Gene: VAS14_23139: putative glutamate racemase (EC 5.1.1.3)
 
Photobacterium profundum SS9

Gene: PBPRA3462: putative glutamate racemase (EC 5.1.1.3)
putative glutamate racemase (EC 5.1.1.3)
 
CRON 2.
btuF
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
*
Vibrio fischeri ES114

Site:
position = -150
score = 31.51
sequence = GATAGAATATCTCAA...

Gene: VF_A0973: Vitamin B12 ABC transporter, B12-binding component BtuF
*
Vibrio salmonicida LFI1238

Site:
position = -127
score = 29.04
sequence = GAATACGGTGAAACT...

Gene: VSAL_II1074: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Vibrio angustum S14

Gene: VAS14_22432: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Photobacterium profundum SS9
Vitamin B12 ABC transporter, B12-binding component BtuF
btuC
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_A0972: Vitamin B12 ABC transporter, permease component BtuC
 
Vibrio salmonicida LFI1238

Gene: VSAL_II1075: Vitamin B12 ABC transporter, permease component BtuC
 
Vibrio angustum S14

Gene: VAS14_22437: Vitamin B12 ABC transporter, permease component BtuC
 
Photobacterium profundum SS9
Vitamin B12 ABC transporter, permease component BtuC
btuD
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_A0971: Vitamin B12 ABC transporter, ATPase component BtuD
 
Vibrio salmonicida LFI1238

Gene: VSAL_II1076: Vitamin B12 ABC transporter, ATPase component BtuD
 
Vibrio angustum S14

Gene: VAS14_22442: Vitamin B12 ABC transporter, ATPase component BtuD
 
Photobacterium profundum SS9
Vitamin B12 ABC transporter, ATPase component BtuD
 
CRON 3.
cbiD
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
*
Vibrio splendidus LGP32

Site:
position = -223
score = 82.98
sequence = GGGAATCAGGTGTAA...

Gene: VS_2661: Cobalt-precorrin-6 synthase, anaerobic
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Cobalt-precorrin-6 synthase, anaerobic
cbiC
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2662: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
cbiET
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2663: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
cbiL
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2664: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
cbiG
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2665: Cobalamin biosynthesis protein CbiG
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Cobalamin biosynthesis protein CbiG
cbiK
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2666: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
cbiH
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2667: Cobalt-precorrin-3b C17-methyltransferase
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Cobalt-precorrin-3b C17-methyltransferase
cbiF
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2668: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
cbiB
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2669: Adenosylcobinamide-phosphate synthase
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Adenosylcobinamide-phosphate synthase
cobD
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2670: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
cbiA
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2671: Cobyrinic acid A,C-diamide synthase
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Cobyrinic acid A,C-diamide synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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