Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Vibrionales

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 1 1
Vibrio vulnificus CMCP6 1 1
Vibrio harveyi ATCC BAA-1116 1 1
Vibrio parahaemolyticus RIMD 2210633 1 1
Vibrio shilonii AK1 1 1
Vibrio splendidus LGP32 1 1
Vibrio fischeri ES114 1 1
Vibrio salmonicida LFI1238 1 1
Vibrio angustum S14 1 1
Photobacterium profundum SS9 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glyP
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -193
score = 72.33
sequence = TGGAGGAACCTCTGG...

Site:
position = -324
score = 25.28
sequence = GTTGAAGACTGCAGG...

Gene: VC1422: Sodium/glycine symporter GlyP
*
Vibrio vulnificus CMCP6

Site:
position = -366
score = 28.97
sequence = TGAAGGCTACAGGAG...

Site:
position = -229
score = 64.55
sequence = CTCTGGAGAGAACCG...

Gene: VV1_2695: Sodium/glycine symporter GlyP
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -210
score = 63.79
sequence = CTCTGGAGAGAACCG...

Site:
position = -326
score = 28.95
sequence = TGAAGACTGCAGGAG...

Gene: VIBHAR_02469: Sodium/glycine symporter GlyP
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -211
score = 63.35
sequence = CTCTGGAGAGAACCG...

Site:
position = -327
score = 30.23
sequence = TGAAGACTGCAGGAG...

Gene: VP1741: Sodium/glycine symporter GlyP
*
Vibrio shilonii AK1

Site:
position = -246
score = 71.71
sequence = TGGAGGAACCTCTGG...

Site:
position = -387
score = 23.76
sequence = GTTGAAGACTGCAGG...

Gene: VSAK1_25755: Sodium/glycine symporter GlyP
*
Vibrio splendidus LGP32

Site:
position = -387
score = 32.85
sequence = GATGAAGACTGCAGG...

Site:
position = -264
score = 66.0
sequence = TGGAGGAACCTCTGG...

Gene: VS_1291: Sodium/glycine symporter GlyP
*
Vibrio fischeri ES114

Site:
position = -194
score = 62.67
sequence = TCTGGAGAGAGCCGT...

Site:
position = -312
score = 32.68
sequence = TGAAGACTGCAGGAG...

Gene: VF_1454: Sodium/glycine symporter GlyP
*
Vibrio salmonicida LFI1238

Site:
position = -193
score = 62.07
sequence = TCTGGAGAGAGTCGT...

Site:
position = -309
score = 35.46
sequence = TGAAGACTGCAGGAG...

Gene: VSAL_I1796: Sodium/glycine symporter GlyP
*
Vibrio angustum S14

Site:
position = -171
score = 72.16
sequence = TGGAGGAGCCTCTGG...

Site:
position = -328
score = 32.24
sequence = GATGAAGACAGCAGG...

Gene: VAS14_01791: Sodium/glycine symporter GlyP
*
Photobacterium profundum SS9

Site:
position = -197
score = 73.3
sequence = GAGGAGCCTCTGGAG...

Site:
position = -375
score = 26.33
sequence = TGAAGATAGCAGGAG...

Gene: PBPRA2132: Sodium/glycine symporter GlyP
Sodium/glycine symporter GlyP
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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