Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GEMM_RNA_motif - Vibrionales

Properties
Regulator type: RNA regulatory element
Name: GEMM_RNA_motif
RFAM: RF01051
Regulation mode:
Biological process: Second messenger response
Effector: Cyclic diguanylate
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 2 2
Vibrio vulnificus CMCP6 2 2
Vibrio harveyi ATCC BAA-1116 1 1
Vibrio parahaemolyticus RIMD 2210633 2 2
Vibrio shilonii AK1 1 1
Vibrio splendidus LGP32 1 1
Vibrio fischeri ES114 1 1
Vibrio salmonicida LFI1238 1 1
Vibrio angustum S14 1 1
Photobacterium profundum SS9 3 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
tfoX
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -199
score = 68.73
sequence = CACGCACAGGGCAAA...

Gene: VC1722: Positive regulator of competence TfoX
*
Vibrio vulnificus CMCP6

Site:
position = -205
score = 67.85
sequence = GTCACGCACAGGGCA...

Gene: VV1_2136: Positive regulator of competence TfoX
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -207
score = 67.82
sequence = GTCACGCACAGGGCA...

Gene: VIBHAR_01580: Positive regulator of competence TfoX
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -207
score = 69.3
sequence = GTCACGCACAGGGCA...

Gene: VP1028: Positive regulator of competence TfoX
*
Vibrio shilonii AK1

Site:
position = -204
score = 72.68
sequence = GTCACGCACAGGGCA...

Gene: VSAK1_04062: Positive regulator of competence TfoX
*
Vibrio splendidus LGP32

Site:
position = -214
score = 72.35
sequence = GTCACGCACAGGGCA...

Gene: VS_1087: Positive regulator of competence TfoX
*
Vibrio fischeri ES114

Site:
position = -210
score = 72.67
sequence = CACGAACATGGCAAA...

Gene: VF_1573: Positive regulator of competence TfoX
*
Vibrio salmonicida LFI1238

Site:
position = -212
score = 62.97
sequence = GTCACGAACAGGGCA...

Gene: VSAL_I1982: Positive regulator of competence TfoX
*
Vibrio angustum S14

Site:
position = -224
score = 74.21
sequence = TCACGAACTGGCAAA...

Gene: VAS14_03998: Positive regulator of competence TfoX
*
Photobacterium profundum SS9

Site:
position = -225
score = 72.53
sequence = ACGAAACAAGGCAAA...

Gene: PBPRA2110: Positive regulator of competence TfoX
Positive regulator of competence TfoX
 
CRON 2.
cbp
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -223
score = 54.59
sequence = TCACACTTTGGCAAA...

Gene: VCA0811: Chitin binding protein
*
Vibrio vulnificus CMCP6

Site:
position = -231
score = 63.26
sequence = CATCACACATAGGCA...

Gene: VV20044: Chitin binding protein
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_04739: Chitin binding protein
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -204
score = 51.49
sequence = TCACATTTCGGCAAA...

Gene: VPA1598: Chitin binding protein
 
Vibrio shilonii AK1

Gene: VSAK1_17082: Chitin binding protein
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_A0143: Chitin binding protein
 
Vibrio salmonicida LFI1238

Gene: VSAL_II0134: Chitin binding protein
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -155
score = 59.16
sequence = CACATTGTTGGCAAA...

Gene: PBPRB0312: Chitin binding protein
Chitin binding protein
 
CRON 3.
tagA
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02194: Lipoprotein, ToxR-activated gene, TagA
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -187
score = 80.03
sequence = TATGTAAAGGGCAAA...

Gene: PBPRA2288: Lipoprotein, ToxR-activated gene, TagA
Lipoprotein, ToxR-activated gene, TagA
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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