Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Lysine - Vibrionales

Properties
Regulator type: RNA regulatory element
Name: Lysine
RFAM: RF00168
Regulation mode:
Biological process: Lysine biosynthesis
Effector: Lysine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 3 3
Vibrio vulnificus CMCP6 2 2
Vibrio harveyi ATCC BAA-1116 2 2
Vibrio parahaemolyticus RIMD 2210633 2 2
Vibrio shilonii AK1 2 2
Vibrio splendidus LGP32 2 2
Vibrio fischeri ES114 2 2
Vibrio salmonicida LFI1238 1 1
Vibrio angustum S14 3 3
Photobacterium profundum SS9 3 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lysC
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -289
score = 90.87
sequence = ATCTAGCAGAAGAGG...

Gene: VC0391: Aspartokinase (EC 2.7.2.4)
*
Vibrio vulnificus CMCP6

Site:
position = -300
score = 80.36
sequence = TTTTTGCAGAAGAGG...

Gene: VV1_1424: Aspartokinase (EC 2.7.2.4)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -301
score = 77.36
sequence = TATGCAGAAGAGGAG...

Gene: VIBHAR_03711: Aspartokinase (EC 2.7.2.4)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -280
score = 79.62
sequence = TATGTAGAAGAGGAG...

Gene: VP2715: Aspartokinase (EC 2.7.2.4)
*
Vibrio shilonii AK1

Site:
position = -275
score = 81.14
sequence = ACAGCGGAAGAGGAG...

Gene: VSAK1_13886: Aspartokinase (EC 2.7.2.4)
*
Vibrio splendidus LGP32

Site:
position = -288
score = 87.17
sequence = ATCTAGCAGAAGAGG...

Gene: VS_0316: Aspartokinase (EC 2.7.2.4)
*
Vibrio fischeri ES114

Site:
position = -241
score = 79.49
sequence = AATATAAAGAAGAGG...

Gene: VF_0338: Aspartokinase (EC 2.7.2.4)
 
Vibrio salmonicida LFI1238
*
Vibrio angustum S14

Site:
position = -287
score = 78.71
sequence = TTAAAACGGAAGAGG...

Gene: VAS14_19431: Aspartokinase (EC 2.7.2.4)
*
Photobacterium profundum SS9

Site:
position = -299
score = 77.65
sequence = AAAACGGAAGAGGAG...

Gene: PBPRA3293: Aspartokinase (EC 2.7.2.4)
Aspartokinase (EC 2.7.2.4)
 
CRON 2.
lysW
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -297
score = 119.65
sequence = TTCGCCGTAGAGGAG...

Gene: VC1131: Predicted lysine transporter, NhaC family
*
Vibrio vulnificus CMCP6

Site:
position = -338
score = 129.92
sequence = TTATCGACGTAGAGG...

Gene: VV1_2922: Predicted lysine transporter, NhaC family
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -289
score = 128.03
sequence = ATTGCCGTAGAGGTG...

Gene: VIBHAR_01828: Predicted lysine transporter, NhaC family
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -293
score = 127.0
sequence = GTTGCCGTAGAGGCG...

Gene: VP1134: Predicted lysine transporter, NhaC family
*
Vibrio shilonii AK1

Site:
position = -296
score = 117.86
sequence = TTTGATGTAGAGGCG...

Gene: VSAK1_00180: Predicted lysine transporter, NhaC family
*
Vibrio splendidus LGP32

Site:
position = -282
score = 136.17
sequence = TACCGCACGTAGAGG...

Gene: VS_2027: Predicted lysine transporter, NhaC family
*
Vibrio fischeri ES114

Site:
position = -266
score = 130.14
sequence = CTAAAAGGGTAGAGG...

Gene: VF_1630: Predicted lysine transporter, NhaC family
*
Vibrio salmonicida LFI1238

Site:
position = -269
score = 124.97
sequence = CTAAACGGGTAGAGG...

Gene: VSAL_I2144: Predicted lysine transporter, NhaC family
*
Vibrio angustum S14

Site:
position = -264
score = 111.68
sequence = TGTAAGGTAGAGGCG...

Gene: VAS14_17901: Predicted lysine transporter, NhaC family
*
Photobacterium profundum SS9

Site:
position = -377
score = 135.26
sequence = CTAAGGGTAGAGGCG...

Gene: PBPRA1083: Predicted lysine transporter, NhaC family
Predicted lysine transporter, NhaC family
 
CRON 3.
lysW2
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -243
score = 124.08
sequence = TCCTTTAAGTAGAGG...

Gene: VCA0213: Predicted lysine transporter, NhaC family
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
*
Vibrio angustum S14

Site:
position = -255
score = 126.66
sequence = CTTTGAGTAGAGGCG...

Gene: VAS14_04198: Predicted lysine transporter, NhaC family
*
Photobacterium profundum SS9

Site:
position = -254
score = 117.59
sequence = TAATCAGTAGAGGTG...

Gene: PBPRA2736: Predicted lysine transporter, NhaC family
Predicted lysine transporter, NhaC family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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