Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L10_leader - Vibrionales

Properties
Regulator type: RNA regulatory element
Name: L10_leader
RFAM: RF00557
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio vulnificus CMCP6
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633
Vibrio shilonii AK1
Vibrio splendidus LGP32 2 1
Vibrio fischeri ES114 2 1
Vibrio salmonicida LFI1238 2 1
Vibrio angustum S14
Photobacterium profundum SS9
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplJ
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC0326: LSU ribosomal protein L10p (P0)
 
Vibrio vulnificus CMCP6

Gene: VV1_1209: LSU ribosomal protein L10p (P0)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_00227: LSU ribosomal protein L10p (P0)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP2924: LSU ribosomal protein L10p (P0)
 
Vibrio shilonii AK1
*
Vibrio splendidus LGP32

Site:
position = -139
score = 25.33
sequence = AGCAATTCAGGTCAT...

Gene: VS_2965: LSU ribosomal protein L10p (P0)
*
Vibrio fischeri ES114

Site:
position = -288
score = 24.18
sequence = TTTAATTAGGAAGTC...

Gene: VF_2416: LSU ribosomal protein L10p (P0)
*
Vibrio salmonicida LFI1238

Site:
position = -178
score = 20.51
sequence = TTTGATTAAATAGTC...

Gene: VSAL_I2868: LSU ribosomal protein L10p (P0)
 
Vibrio angustum S14

Gene: VAS14_19166: LSU ribosomal protein L10p (P0)
 
Photobacterium profundum SS9

Gene: PBPRA3434: LSU ribosomal protein L10p (P0)
LSU ribosomal protein L10p (P0)
rplL
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC0327: LSU ribosomal protein L7/L12 (P1/P2)
 
Vibrio vulnificus CMCP6

Gene: VV1_1210: LSU ribosomal protein L7/L12 (P1/P2)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_00226: LSU ribosomal protein L7/L12 (P1/P2)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP2923: LSU ribosomal protein L7/L12 (P1/P2)
 
Vibrio shilonii AK1

Gene: VSAK1_09858: LSU ribosomal protein L7/L12 (P1/P2)
 
Vibrio splendidus LGP32

Gene: VS_2964: LSU ribosomal protein L7/L12 (P1/P2)
 
Vibrio fischeri ES114

Gene: VF_2415: LSU ribosomal protein L7/L12 (P1/P2)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I2867: LSU ribosomal protein L7/L12 (P1/P2)
 
Vibrio angustum S14

Gene: VAS14_19161: LSU ribosomal protein L7/L12 (P1/P2)
 
Photobacterium profundum SS9

Gene: PBPRA3433: LSU ribosomal protein L7/L12 (P1/P2)
LSU ribosomal protein L7/L12 (P1/P2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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