Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Vibrionales

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 1 1
Vibrio vulnificus CMCP6 1 1
Vibrio harveyi ATCC BAA-1116 1 1
Vibrio parahaemolyticus RIMD 2210633 1 1
Vibrio shilonii AK1 1 1
Vibrio splendidus LGP32 1 1
Vibrio fischeri ES114
Vibrio salmonicida LFI1238
Vibrio angustum S14 1 1
Photobacterium profundum SS9 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribB
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -254
score = 112.02
sequence = ACAATATTCTCAGGG...

Gene: VCA1060: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Vibrio vulnificus CMCP6

Site:
position = -238
score = 125.26
sequence = TTTTTATTCTCAGGG...

Gene: VV21426: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*2
Vibrio harveyi ATCC BAA-1116

Site:
position = -315
score = 124.34
sequence = TCAATGTTCTCAGGG...

Gene: VIBHAR_05311: 3,4-dihydroxy-2-butanone 4-phosphate synthase

Gene: VIBHAR_06238: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -253
score = 128.02
sequence = ATTGTTCTCAGGGCG...

Gene: VPA1250: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Vibrio shilonii AK1

Site:
position = -343
score = 131.4
sequence = TTTATTCTCAGGGCG...

Gene: VSAK1_11965: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Vibrio splendidus LGP32

Site:
position = -497
score = 121.84
sequence = TTTATTCTCAGGGCG...

Gene: VS_II1263: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
*
Vibrio angustum S14

Site:
position = -164
score = 124.17
sequence = TATTAATTCTCAGGG...

Gene: VAS14_06598: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Photobacterium profundum SS9

Site:
position = -330
score = 99.53
sequence = TCTGAATTCTCAGGG...

Gene: PBPRB0898: 3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD