Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog ykoK - Mycobacteriaceae

Properties
Regulator type: RNA regulatory element
Name: ykoK
RFAM: RF00380
Regulation mode:
Biological process: Magnesium homeostasis
Effector: Magnesium ion, (Mg2+)
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Mycobacterium tuberculosis H37Rv 3 2
Mycobacterium leprae TN
Mycobacterium marinum M 3 2
Mycobacterium avium 104 6 3
Mycobacterium sp. JLS
Mycobacterium vanbaalenii PYR-1
Mycobacterium flavescens PYR-GCK
Mycobacterium smegmatis str. MC2 155 1 1
Mycobacterium abscessus ATCC 19977 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
MMAR_0314
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN
*
Mycobacterium marinum M

Site:
position = -468
score = 134.35
sequence = AAGCACCTCGGTAGG...

Gene: MMAR_0314: Hypothetical protein
*
Mycobacterium avium 104

Site:
position = -463
score = 127.04
sequence = GCAAGCACCTCGGTA...

Gene: MAV_5198: Hypothetical protein
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155
 
Mycobacterium abscessus ATCC 19977
Hypothetical protein
COG1914
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN

Gene: ML2667: Divalent cation-transport integral membrane protein
 
Mycobacterium marinum M

Gene: MMAR_0315: Divalent cation-transport integral membrane protein
 
Mycobacterium avium 104

Gene: MAV_5197: Divalent cation-transport integral membrane protein
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155
*
Mycobacterium abscessus ATCC 19977

Site:
position = -536
score = 137.04
sequence = GTCAGCACCTCGCTA...

Gene: MAB_4716c: Divalent cation-transport integral membrane protein
Divalent cation-transport integral membrane protein
 
CRON 2.
Rv1535
*
Mycobacterium tuberculosis H37Rv

Site:
position = -466
score = 141.43
sequence = AAGCACCTCGTTAGG...

Gene: Rv1535: Hypothetical protein
 
Mycobacterium leprae TN
*
Mycobacterium marinum M

Site:
position = -454
score = 140.34
sequence = AAGCACCTCGTTAGG...

Gene: MMAR_2348: Hypothetical protein
*
Mycobacterium avium 104

Site:
position = -479
score = 132.43
sequence = GTAAGCACCTCGTTA...

Gene: MAV_3236: Hypothetical protein
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155
 
Mycobacterium abscessus ATCC 19977
Hypothetical protein
 
CRON 3.
MSMEG_5646
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN
 
Mycobacterium marinum M
 
Mycobacterium avium 104
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -404
score = 129.98
sequence = CCGCGCTTCGTTAGG...

Gene: MSMEG_5646: hypothetical protein
 
Mycobacterium abscessus ATCC 19977
hypothetical protein
 
CRON 4.
PE20
*
Mycobacterium tuberculosis H37Rv

Site:
position = -476
score = 131.69
sequence = AAGCACCTCGCTAGG...

Gene: Rv1806: PE-PGRS family protein
 
Mycobacterium leprae TN
 
Mycobacterium marinum M

Gene: MMAR_4786: PE-PGRS family protein
*
Mycobacterium avium 104

Site:
position = -459
score = 131.87
sequence = GCAAGCACCTCGCTA...

Gene: MAV_2915: PE-PGRS family protein
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155
 
Mycobacterium abscessus ATCC 19977
PE-PGRS family protein
ppe
 
Mycobacterium tuberculosis H37Rv

Gene: Rv1807: PPE family protein
 
Mycobacterium leprae TN
 
Mycobacterium marinum M
 2
Mycobacterium avium 104

Gene: MAV_2914: PPE family protein

Gene: MAV_2913: PPE family protein
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155
 
Mycobacterium abscessus ATCC 19977
PPE family protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD