Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Mycobacteriaceae

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Mycobacterium tuberculosis H37Rv 3 2
Mycobacterium leprae TN
Mycobacterium marinum M 6 2
Mycobacterium avium 104 1 1
Mycobacterium sp. JLS 1 1
Mycobacterium vanbaalenii PYR-1 1 1
Mycobacterium flavescens PYR-GCK 1 1
Mycobacterium smegmatis str. MC2 155 1 1
Mycobacterium abscessus ATCC 19977 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gcvB
*
Mycobacterium tuberculosis H37Rv

Site:
position = -167
score = 38.92
sequence = ACGATGCCTCTGGAA...

Site:
position = -263
score = 53.68
sequence = GCTCTAGTGCGGGAG...

Gene: Rv1832: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Mycobacterium leprae TN

Gene: ML2072: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
*2
Mycobacterium marinum M

Site:
position = -289
score = 55.81
sequence = GTTCTCGTGCGGGAG...

Site:
position = -189
score = 27.75
sequence = TGCCTCTGGAAAGCG...

Gene: MMAR_2708: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)

Site:
position = -253
score = 55.66
sequence = TTGACGCGACGCGGG...

Site:
position = -165
score = 36.13
sequence = CCGAGGCGACTCTGG...

Gene: MMAR_0211: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
*
Mycobacterium avium 104

Site:
position = -275
score = 52.02
sequence = TCGCATTCGAGCGGG...

Site:
position = -180
score = 32.2
sequence = ACATGATGCCTCTGG...

Gene: MAV_2884: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
*
Mycobacterium sp. JLS

Site:
position = -267
score = 45.07
sequence = TCGCCCGTGTGCGGG...

Site:
position = -170
score = 23.75
sequence = CCTCGATGCCTCTGG...

Gene: Mjls_2871: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
*
Mycobacterium vanbaalenii PYR-1

Site:
position = -141
score = 34.29
sequence = CCCCGATGCCTCTGG...

Site:
position = -238
score = 46.72
sequence = ATCGCCCTGTGCGGG...

Gene: Mvan_3131: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
*
Mycobacterium flavescens PYR-GCK

Site:
position = -160
score = 22.43
sequence = CCCCGATGCCTCTGG...

Site:
position = -257
score = 43.26
sequence = TCGCCCTTGCGCGGG...

Gene: Mflv_3398: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -284
score = 50.3
sequence = ATCGACCTGTGCGGG...

Site:
position = -187
score = 31.42
sequence = CCACGATGCCTCTGG...

Gene: MSMEG_3642: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
*
Mycobacterium abscessus ATCC 19977

Site:
position = -12
score = 44.71
sequence = CGGGAGAGTGTCATG...

Gene: MAB_2407: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
gcvT
 
Mycobacterium tuberculosis H37Rv

Gene: Rv2211c: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Mycobacterium leprae TN

Gene: ML0865: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 2
Mycobacterium marinum M

Gene: MMAR_3256: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)

Gene: MMAR_0210: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Mycobacterium avium 104

Gene: MAV_2280: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Mycobacterium sp. JLS

Gene: Mjls_3320: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Mycobacterium vanbaalenii PYR-1

Gene: Mvan_3574: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Mycobacterium flavescens PYR-GCK

Gene: Mflv_2939: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Mycobacterium smegmatis str. MC2 155

Gene: MSMEG_4278: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Mycobacterium abscessus ATCC 19977

Gene: MAB_1949: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN
 
Mycobacterium marinum M

Gene: MMAR_0209: Glycine cleavage system H protein
 
Mycobacterium avium 104
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155
 
Mycobacterium abscessus ATCC 19977
Glycine cleavage system H protein
glyA2
*
Mycobacterium tuberculosis H37Rv

Site:
position = -399
score = 50.49
sequence = CTGACGCGATGTGGG...

Site:
position = -312
score = 31.29
sequence = CCGAGGCAACTCTGG...

Gene: Rv0070c: Serine hydroxymethyltransferase (EC 2.1.2.1)
 
Mycobacterium leprae TN
 
Mycobacterium marinum M

Gene: MMAR_0208: Serine hydroxymethyltransferase (EC 2.1.2.1)
 
Mycobacterium avium 104
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155
 
Mycobacterium abscessus ATCC 19977
Serine hydroxymethyltransferase (EC 2.1.2.1)
sdaA
 
Mycobacterium tuberculosis H37Rv

Gene: Rv0069c: L-serine dehydratase (EC 4.3.1.17)
 
Mycobacterium leprae TN

Gene: ML1755: L-serine dehydratase (EC 4.3.1.17)
 
Mycobacterium marinum M

Gene: MMAR_0207: L-serine dehydratase (EC 4.3.1.17)
 
Mycobacterium avium 104
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK

Gene: Mflv_0819: L-serine dehydratase (EC 4.3.1.17)
 
Mycobacterium smegmatis str. MC2 155

Gene: MSMEG_3440: L-serine dehydratase (EC 4.3.1.17)
 
Mycobacterium abscessus ATCC 19977
L-serine dehydratase (EC 4.3.1.17)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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