Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L10_leader - Deinococcus-Thermus

Properties
Regulator type: RNA regulatory element
Name: L10_leader
RFAM: RF00557
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Deinococcus-Thermus
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus radiodurans R1
Deinococcus geothermalis DSM 11300 2 1
Deinococcus deserti VCD115 2 1
Thermus thermophilus HB27 2 1
Thermus aquaticus Y51MC23 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplJ
 
Deinococcus radiodurans R1

Gene: DR2044: LSU ribosomal protein L10p (P0)
*
Deinococcus geothermalis DSM 11300

Site:
position = -118
score = 22.23
sequence = CACCTTTCCAATTTC...

Gene: Dgeo_0640: LSU ribosomal protein L10p (P0)
*
Deinococcus deserti VCD115

Site:
position = -120
score = 20.45
sequence = ATAGGCCCCAATTCC...

Gene: Deide_06060: LSU ribosomal protein L10p (P0)
*
Thermus thermophilus HB27

Site:
position = -123
score = 21.46
sequence = GCCAAAGACAGCGGG...

Gene: TTC1777: LSU ribosomal protein L10p (P0)
*
Thermus aquaticus Y51MC23

Site:
position = -115
score = 25.53
sequence = CAAAGACAGCGGGGG...

Gene: TaqDRAFT_4672: LSU ribosomal protein L10p (P0)
LSU ribosomal protein L10p (P0)
rplL
 
Deinococcus radiodurans R1

Gene: DR2043: LSU ribosomal protein L7/L12 (P1/P2)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_0639: LSU ribosomal protein L7/L12 (P1/P2)
 
Deinococcus deserti VCD115

Gene: Deide_06050: LSU ribosomal protein L7/L12 (P1/P2)
 
Thermus thermophilus HB27

Gene: TTC1776: LSU ribosomal protein L7/L12 (P1/P2)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4673: LSU ribosomal protein L7/L12 (P1/P2)
LSU ribosomal protein L7/L12 (P1/P2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD