Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GEMM_RNA_motif - Deinococcus-Thermus

Properties
Regulator type: RNA regulatory element
Name: GEMM_RNA_motif
RFAM: RF01051
Regulation mode:
Biological process: Second messenger response
Effector: Cyclic diguanylate
Phylum: Deinococcus-Thermus
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus radiodurans R1
Deinococcus geothermalis DSM 11300
Deinococcus deserti VCD115 3 3
Thermus thermophilus HB27
Thermus aquaticus Y51MC23
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
licB
 
Deinococcus radiodurans R1
 
Deinococcus geothermalis DSM 11300
*2
Deinococcus deserti VCD115

Site:
position = -205
score = 46.04
sequence = AAACCGAAAAAGGCA...

Gene: Deide_1p01250: Beta-glucanase (putative lichenase) (3.2.1.73)

Site:
position = -257
score = 46.04
sequence = AAACCGAAAAAGGCA...

Gene: Deide_1p00130: Beta-glucanase (putative lichenase) (3.2.1.73)
 
Thermus thermophilus HB27
 
Thermus aquaticus Y51MC23
Beta-glucanase (putative lichenase) (3.2.1.73)
 
CRON 2.
Deide_1p01370
 
Deinococcus radiodurans R1
 
Deinococcus geothermalis DSM 11300
*
Deinococcus deserti VCD115

Site:
position = -91
score = 47.61
sequence = ACACCGAAAAAGGCA...

Gene: Deide_1p01370: Pectin lyase fold protein
 
Thermus thermophilus HB27
 
Thermus aquaticus Y51MC23
Pectin lyase fold protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD