Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog glmS - Deinococcus-Thermus

Properties
Regulator type: RNA regulatory element
Name: glmS
RFAM: RF00234
Regulation mode:
Biological process: Amino sugar metabolism
Effector: Glucosamine-6-phosphate
Phylum: Deinococcus-Thermus
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus radiodurans R1 1 1
Deinococcus geothermalis DSM 11300 1 1
Deinococcus deserti VCD115 1 1
Thermus thermophilus HB27
Thermus aquaticus Y51MC23
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glmS
*
Deinococcus radiodurans R1

Site:
position = -232
score = 30.27
sequence = TTCTTCGGGCAGCGC...

Gene: DR0302: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Deinococcus geothermalis DSM 11300

Site:
position = -249
score = 26.62
sequence = ACACAAACGGGAAGC...

Gene: Dgeo_0010: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Deinococcus deserti VCD115

Site:
position = -303
score = 36.38
sequence = ACGAAACAGGGCAGC...

Gene: Deide_21520: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Thermus thermophilus HB27

Gene: TTC1533: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3947: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD