Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SAM - Deinococcus-Thermus

Properties
Regulator type: RNA regulatory element
Name: SAM
RFAM: RF00162
Regulation mode:
Biological process: Methionine biosynthesis
Effector: S-adenosylmethionine
Phylum: Deinococcus-Thermus
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus radiodurans R1 6 2
Deinococcus geothermalis DSM 11300 4 2
Deinococcus deserti VCD115 7 3
Thermus thermophilus HB27 2 1
Thermus aquaticus Y51MC23 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metY
*
Deinococcus radiodurans R1

Site:
position = 151
score = 28.1
sequence = CACCCACTTCAGAGC...

Gene: DR0873: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
*
Deinococcus geothermalis DSM 11300

Site:
position = -243
score = 51.06
sequence = GACCTCATCCAGAGC...

Gene: Dgeo_0518: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
*
Deinococcus deserti VCD115

Site:
position = -233
score = 35.94
sequence = AACCCACTTCAGAGC...

Gene: Deide_16040: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
*
Thermus thermophilus HB27

Site:
position = -275
score = 49.32
sequence = TCTCTTATCCAGAGC...

Gene: TTC0408: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
*
Thermus aquaticus Y51MC23

Site:
position = -242
score = 56.07
sequence = TCTTATCCAGAGCGG...

Gene: TaqDRAFT_5358: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
metX
 
Deinococcus radiodurans R1

Gene: DR0872: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_0517: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Deinococcus deserti VCD115

Gene: Deide_16030: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Thermus thermophilus HB27

Gene: TTC0407: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5359: Homoserine O-acetyltransferase (EC 2.3.1.31)
Homoserine O-acetyltransferase (EC 2.3.1.31)
 
CRON 2.
metN
*
Deinococcus radiodurans R1

Site:
position = -264
score = 30.16
sequence = CTTTATCCAGAGTCG...

Gene: DR1356: Methionine ABC transporter ATP-binding protein
 
Deinococcus geothermalis DSM 11300
*
Deinococcus deserti VCD115

Site:
position = -261
score = 42.22
sequence = ACCTTTATCCAGAGC...

Gene: Deide_22360: Methionine ABC transporter ATP-binding protein
 
Thermus thermophilus HB27
 
Thermus aquaticus Y51MC23
Methionine ABC transporter ATP-binding protein
metI
 
Deinococcus radiodurans R1

Gene: DR1357: Methionine ABC transporter permease protein
 
Deinococcus geothermalis DSM 11300
 
Deinococcus deserti VCD115

Gene: Deide_22350: Methionine ABC transporter permease protein
 
Thermus thermophilus HB27
 
Thermus aquaticus Y51MC23
Methionine ABC transporter permease protein
metQ
 2
Deinococcus radiodurans R1

Gene: DR1358: Methionine ABC transporter substrate-binding protein

Gene: DR1359: Methionine ABC transporter substrate-binding protein
 
Deinococcus geothermalis DSM 11300
 
Deinococcus deserti VCD115

Gene: Deide_22340: Methionine ABC transporter substrate-binding protein
 
Thermus thermophilus HB27
 
Thermus aquaticus Y51MC23
Methionine ABC transporter substrate-binding protein
 
CRON 3.
metH
 
Deinococcus radiodurans R1

Gene: DR0966: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Deinococcus geothermalis DSM 11300

Site:
position = -214
score = 21.61
sequence = GGTCATCCTGAGCGC...

Gene: Dgeo_1336: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Deinococcus deserti VCD115

Site:
position = -274
score = 23.74
sequence = ACGGTCATCCAGAGA...

Gene: Deide_11120: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Thermus thermophilus HB27

Gene: TTC0253: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5403: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
metF
 
Deinococcus radiodurans R1

Gene: DR0968: 5,10-methylenetetrahydrofolate reductase-related protein
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1337: 5,10-methylenetetrahydrofolate reductase-related protein
 
Deinococcus deserti VCD115

Gene: Deide_11110: 5,10-methylenetetrahydrofolate reductase-related protein
 
Thermus thermophilus HB27
 
Thermus aquaticus Y51MC23
5,10-methylenetetrahydrofolate reductase-related protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD