Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PaaR - Flavobacteria

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cellulophaga sp. MED134 12 1
Croceibacter atlanticus HTCC2559 9 2
Flavobacteriales bacterium ALC-1 16 1
Flavobacteria bacterium BBFL7 7 2
Kordia algicida OT-1 11 1
Psychroflexus torquis ATCC 700755 14 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
paaE
*
Cellulophaga sp. MED134

Site:
position = -42
score = 5.53632
sequence = TTAACTAACAATCGTTAG

Gene: MED134_11666: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
*
Croceibacter atlanticus HTCC2559

Site:
position = -65
score = 6.20578
sequence = CTAACTAACGTTTGTTAG

Gene: CA2559_05340: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
*
Flavobacteriales bacterium ALC-1

Site:
position = -39
score = 6.24534
sequence = CAAACTAACAAGTGTTAG

Gene: FBALC1_14257: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
*
Flavobacteria bacterium BBFL7

Site:
position = -47
score = 6.24534
sequence = CAAACTAACAAGTGTTAG

Gene: BBFL7_02466: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
*
Kordia algicida OT-1

Site:
position = -44
score = 6.29508
sequence = CAAACTAACAATTGTTAG

Gene: KAOT1_20492: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
*
Psychroflexus torquis ATCC 700755

Site:
position = -41
score = 5.44702
sequence = TAAACTAACAATCGTTAG

Gene: P700755_04168: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
paaA
 
Cellulophaga sp. MED134

Gene: MED134_11671: Phenylacetate-CoA oxygenase, PaaA subunit
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05335: Phenylacetate-CoA oxygenase, PaaA subunit
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14252: Phenylacetate-CoA oxygenase, PaaA subunit
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02465: Phenylacetate-CoA oxygenase, PaaA subunit
 
Kordia algicida OT-1

Gene: KAOT1_20497: Phenylacetate-CoA oxygenase, PaaA subunit
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04163: Phenylacetate-CoA oxygenase, PaaA subunit
Phenylacetate-CoA oxygenase, PaaA subunit
paaB
 
Cellulophaga sp. MED134

Gene: MED134_11676: Phenylacetate-CoA oxygenase, PaaB subunit
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05330: Phenylacetate-CoA oxygenase, PaaB subunit
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14247: Phenylacetate-CoA oxygenase, PaaB subunit
 
Flavobacteria bacterium BBFL7
 
Kordia algicida OT-1

Gene: KAOT1_20502: Phenylacetate-CoA oxygenase, PaaB subunit
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04158: Phenylacetate-CoA oxygenase, PaaB subunit
Phenylacetate-CoA oxygenase, PaaB subunit
paaC
 
Cellulophaga sp. MED134

Gene: MED134_11681: Phenylacetate-CoA oxygenase, PaaC subunit
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05320: Phenylacetate-CoA oxygenase, PaaC subunit
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14242: Phenylacetate-CoA oxygenase, PaaC subunit
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02463: Phenylacetate-CoA oxygenase, PaaC subunit
 
Kordia algicida OT-1

Gene: KAOT1_20507: Phenylacetate-CoA oxygenase, PaaC subunit
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04153: Phenylacetate-CoA oxygenase, PaaC subunit
Phenylacetate-CoA oxygenase, PaaC subunit
paaD
 
Cellulophaga sp. MED134

Gene: MED134_11686: Phenylacetate-CoA oxygenase, PaaD subunit
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05315: Phenylacetate-CoA oxygenase, PaaD subunit
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14237: Phenylacetate-CoA oxygenase, PaaD subunit
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02461: Phenylacetate-CoA oxygenase, PaaD subunit
 
Kordia algicida OT-1

Gene: KAOT1_20512: Phenylacetate-CoA oxygenase, PaaD subunit
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04148: Phenylacetate-CoA oxygenase, PaaD subunit
Phenylacetate-CoA oxygenase, PaaD subunit
FBALC1_14232
 
Cellulophaga sp. MED134
 
Croceibacter atlanticus HTCC2559
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14232: hypothetical protein
 
Flavobacteria bacterium BBFL7
 
Kordia algicida OT-1
 
Psychroflexus torquis ATCC 700755
hypothetical protein
paaG
 
Cellulophaga sp. MED134

Gene: MED134_11691: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05310: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14227: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02459: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Kordia algicida OT-1

Gene: KAOT1_20517: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04143: Enoyl-CoA hydratase (EC 4.2.1.17)
Enoyl-CoA hydratase (EC 4.2.1.17)
FBALC1_14222
 
Cellulophaga sp. MED134
 
Croceibacter atlanticus HTCC2559
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14222: serine racemase
 
Flavobacteria bacterium BBFL7
 
Kordia algicida OT-1
 
Psychroflexus torquis ATCC 700755
serine racemase
paaH
 
Cellulophaga sp. MED134

Gene: MED134_11696: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05300: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14217: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02458: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
 
Kordia algicida OT-1

Gene: KAOT1_20527: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04133: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
paaY
 
Cellulophaga sp. MED134

Gene: MED134_11701: thioesterase superfamily protein
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05295: thioesterase superfamily protein
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14212: thioesterase superfamily protein
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02456: thioesterase superfamily protein
 
Kordia algicida OT-1

Gene: KAOT1_20537: thioesterase superfamily protein
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04128: thioesterase superfamily protein
thioesterase superfamily protein
paaJ
 
Cellulophaga sp. MED134

Gene: MED134_11706: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05285: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14207: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02454: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
 
Kordia algicida OT-1

Gene: KAOT1_20542: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04123: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
MED134_11711
 
Cellulophaga sp. MED134

Gene: MED134_11711: Probable short-chain dehydrogenase
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05280: Probable short-chain dehydrogenase
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14202: Probable short-chain dehydrogenase
 
Flavobacteria bacterium BBFL7
 
Kordia algicida OT-1
 
Psychroflexus torquis ATCC 700755
Probable short-chain dehydrogenase
paaZ
 
Cellulophaga sp. MED134

Gene: MED134_11716: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05275: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14197: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
*
Flavobacteria bacterium BBFL7

Site:
position = -104
score = 5.84382
sequence = TTAACTAACAACTGTTAG

Gene: BBFL7_02452: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
Kordia algicida OT-1

Gene: KAOT1_20547: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04108: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
MED134_05859
 
Cellulophaga sp. MED134
 
Croceibacter atlanticus HTCC2559
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14192: hypothetical protein
 
Flavobacteria bacterium BBFL7
 
Kordia algicida OT-1
 
Psychroflexus torquis ATCC 700755
hypothetical protein
paaF
 
Cellulophaga sp. MED134

Gene: MED134_11721: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05265: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14187: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02451: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Kordia algicida OT-1

Gene: KAOT1_20557: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04103: Enoyl-CoA hydratase (EC 4.2.1.17)
Enoyl-CoA hydratase (EC 4.2.1.17)
paaY2
 
Cellulophaga sp. MED134

Gene: MED134_11731: Phenylacetic acid degradation protein PaaY
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05255: Phenylacetic acid degradation protein PaaY
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14182: Phenylacetic acid degradation protein PaaY
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02449: Phenylacetic acid degradation protein PaaY
 
Kordia algicida OT-1

Gene: KAOT1_20562: Phenylacetic acid degradation protein PaaY
 
Psychroflexus torquis ATCC 700755
Phenylacetic acid degradation protein PaaY
KAOT1_20522
 
Cellulophaga sp. MED134
 
Croceibacter atlanticus HTCC2559
 
Flavobacteriales bacterium ALC-1
 
Flavobacteria bacterium BBFL7
 
Kordia algicida OT-1

Gene: KAOT1_20522: hypothetical protein
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04138: hypothetical protein
hypothetical protein
P700755_04118
 
Cellulophaga sp. MED134
 
Croceibacter atlanticus HTCC2559
 
Flavobacteriales bacterium ALC-1
 
Flavobacteria bacterium BBFL7
 
Kordia algicida OT-1
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04118: hypothetical protein
hypothetical protein
P700755_04113
 
Cellulophaga sp. MED134
 
Croceibacter atlanticus HTCC2559
 
Flavobacteriales bacterium ALC-1
 
Flavobacteria bacterium BBFL7
 
Kordia algicida OT-1
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04113: acetyl-CoA acetyltransferase
acetyl-CoA acetyltransferase
MED134_10421
 
Cellulophaga sp. MED134
 
Croceibacter atlanticus HTCC2559
 
Flavobacteriales bacterium ALC-1
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02455: hypothetical protein
 
Kordia algicida OT-1

Gene: KAOT1_20532: hypothetical protein
 
Psychroflexus torquis ATCC 700755
hypothetical protein
CA2559_05325
 
Cellulophaga sp. MED134
 
Croceibacter atlanticus HTCC2559

Gene: CA2559_05325: hypothetical protein
 
Flavobacteriales bacterium ALC-1
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02462: hypothetical protein
 
Kordia algicida OT-1
 
Psychroflexus torquis ATCC 700755
hypothetical protein
BBFL7_02464
 
Cellulophaga sp. MED134
 
Croceibacter atlanticus HTCC2559
 
Flavobacteriales bacterium ALC-1
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_02464: hypothetical protein
 
Kordia algicida OT-1
 
Psychroflexus torquis ATCC 700755
hypothetical protein
 
CRON 2.
paaR
 
Cellulophaga sp. MED134

Gene: MED134_11661: Transcriptional regulator of phenylacetic acid degradation, TetR family
*
Croceibacter atlanticus HTCC2559

Site:
position = -38
score = 6.33464
sequence = CTAACTAACAAGTGTTAG

Gene: CA2559_05345: Transcriptional regulator of phenylacetic acid degradation, TetR family
 
Flavobacteriales bacterium ALC-1

Gene: FBALC1_14262: Transcriptional regulator of phenylacetic acid degradation, TetR family
 
Flavobacteria bacterium BBFL7

Gene: BBFL7_00982: Transcriptional regulator of phenylacetic acid degradation, TetR family
 
Kordia algicida OT-1

Gene: KAOT1_20482: Transcriptional regulator of phenylacetic acid degradation, TetR family
 
Psychroflexus torquis ATCC 700755

Gene: P700755_04188: Transcriptional regulator of phenylacetic acid degradation, TetR family
Transcriptional regulator of phenylacetic acid degradation, TetR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD