Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PaaX - Enterobacteriales

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Gammaproteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Citrobacter koseri ATCC BAA-895
Edwardsiella tarda EIB202
Enterobacter sp. 638
Erwinia amylovora ATCC 49946
Erwinia carotovora subsp. atroseptica SCRI1043
Escherichia coli str. K-12 substr. MG1655 12 2
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 12 2
Photorhabdus luminescens subsp. laumondii TTO1
Proteus mirabilis HI4320
Salmonella typhimurium LT2
Serratia proteamaculans 568 12 2
Yersinia pestis KIM
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
paaZ
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
*
Escherichia coli str. K-12 substr. MG1655

Site:
position = -271
score = 7.4424
sequence = CGATTC-(27)-GAATCA

Site:
position = -54
score = 7.42603
sequence = TGATTC-(28)-GAAACA

Gene: b1387: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Site:
position = -273
score = 8.38521
sequence = TGATTC-(27)-GAATCA

Site:
position = -56
score = 6.46686
sequence = TGATTC-(28)-GTAACA

Gene: KPN_01468: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
*
Serratia proteamaculans 568

Site:
position = -305
score = 8.38521
sequence = TGATTC-(28)-GAATCA

Site:
position = -51
score = 5.59601
sequence = TGATAC-(28)-GAATTC

Gene: Spro_3071: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
Yersinia pestis KIM
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
CRON 2.
paaA
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
*
Escherichia coli str. K-12 substr. MG1655

Site:
position = -270
score = 7.4424
sequence = TGTTTC-(28)-GAATCA

Site:
position = -52
score = 7.97697
sequence = TGATTC-(27)-GAATCG

Gene: b1388: Phenylacetic acid degradation protein paaA
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Site:
position = -52
score = 8.38521
sequence = TGATTC-(27)-GAATCA

Site:
position = -270
score = 6.49959
sequence = TGTTAC-(28)-GAATCA

Gene: KPN_01469: Phenylacetic acid degradation protein paaA
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
*
Serratia proteamaculans 568

Site:
position = -53
score = 8.38521
sequence = TGATTC-(28)-GAATCA

Site:
position = -307
score = 5.54042
sequence = GAATTC-(28)-GTATCA

Gene: Spro_3072: Phenylacetic acid degradation protein paaA
 
Yersinia pestis KIM
Phenylacetic acid degradation protein paaA
paaB
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b1389: Phenylacetic acid degradation protein paaB
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01470: Phenylacetic acid degradation protein paaB
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_3073: Phenylacetic acid degradation protein paaB
 
Yersinia pestis KIM
Phenylacetic acid degradation protein paaB
paaC
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b1390: Phenylacetic acid degradation protein paaC
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01471: Phenylacetic acid degradation protein paaC
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_3074: Phenylacetic acid degradation protein paaC
 
Yersinia pestis KIM
Phenylacetic acid degradation protein paaC
paaD
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b1391: Phenylacetic acid degradation protein paaD
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01472: Phenylacetic acid degradation protein paaD
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_3075: Phenylacetic acid degradation protein paaD
 
Yersinia pestis KIM
Phenylacetic acid degradation protein paaD
paaE
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b1392: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01473: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_3076: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
 
Yersinia pestis KIM
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaF
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b1393: Probable enoyl-CoA hydratase paaF (EC 4.2.1.17)
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01474: Probable enoyl-CoA hydratase paaF (EC 4.2.1.17)
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_3077: Probable enoyl-CoA hydratase paaF (EC 4.2.1.17)
 
Yersinia pestis KIM
Probable enoyl-CoA hydratase paaF (EC 4.2.1.17)
paaG
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b1394: Probable enoyl-CoA hydratase paaG (EC 4.2.1.17)
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01475: Probable enoyl-CoA hydratase paaG (EC 4.2.1.17)
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_3078: Probable enoyl-CoA hydratase paaG (EC 4.2.1.17)
 
Yersinia pestis KIM
Probable enoyl-CoA hydratase paaG (EC 4.2.1.17)
paaH
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b1395: 3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-)
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01476: 3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-)
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_3079: 3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-)
 
Yersinia pestis KIM
3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-)
paaI
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b1396: Phenylacetic acid degradation protein paaI
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01477: Phenylacetic acid degradation protein paaI
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_3080: Phenylacetic acid degradation protein paaI
 
Yersinia pestis KIM
Phenylacetic acid degradation protein paaI
paaJ
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b1397: Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01478: Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_3081: Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
 
Yersinia pestis KIM
Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
paaK
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b1398: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01479: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_3082: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
 
Yersinia pestis KIM
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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