Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog MurR - Lactobacillaceae

Properties
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode:
Biological process: N-acetylmuramate utilization
Effector: N-acetylmuramate-6-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM 4 1
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533 4 1
Lactobacillus plantarum WCFS1 5 1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
murX
 
Lactobacillus acidophilus NCFM

Gene: LBA1703: Predicted outer membrane protein
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533

Gene: LJ1818: Predicted outer membrane protein
*
Lactobacillus plantarum WCFS1

Site:
position = -110
score = 5.4536
sequence = AAGTAATTTAGTTTCTT

Gene: lp_3524: Predicted outer membrane protein
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00127: Predicted outer membrane protein
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Predicted outer membrane protein
murQ
 
Lactobacillus acidophilus NCFM

Gene: LBA1704: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334

Gene: LSEI_0120: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533

Gene: LJ1819: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
 
Lactobacillus plantarum WCFS1

Gene: lp_3523: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00126: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -66
score = 5.74968
sequence = TTGAAATGTTATTTCTT

Gene: PEPE_1043: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
murP
*
Lactobacillus acidophilus NCFM

Site:
position = -39
score = 6.22444
sequence = ATGAAATATTGTTACTT

Gene: LBA1705: MurNAc-specific PTS system, EIIBC component
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334

Gene: LSEI_0119: MurNAc-specific PTS system, EIIBC component
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus johnsonii NCC 533

Site:
position = -36
score = 5.66699
sequence = ATGAAACATTTTTACAT

Gene: LJ1820: MurNAc-specific PTS system, EIIBC component
 2
Lactobacillus plantarum WCFS1

Gene: lp_3520: MurNAc-specific PTS system, EIIBA component

Gene: lp_3522: MurNAc-specific PTS system, EIIBC component
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00125: MurNAc-specific PTS system, EIIBC component
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1042: MurNAc-specific PTS system, EIIBC component
MurNAc-specific PTS system, EIIBC component
murR
 
Lactobacillus acidophilus NCFM

Gene: LBA1702: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533

Gene: LJ1817: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family
 
Lactobacillus plantarum WCFS1

Gene: lp_3521: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1041: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family
N-acetylmuramate utilization transcriptional regulator MurR, RpiR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD