Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PaaR2 - Deinococcus-Thermus

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Deinococcus-Thermus
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus deserti VCD115 14 8
Deinococcus geothermalis DSM 11300 14 8
Deinococcus radiodurans R1 17 10
Thermus aquaticus Y51MC23
Thermus thermophilus HB27
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
paaR
*
Deinococcus deserti VCD115

Site:
position = -95
score = 4.84557
sequence = CAAACGAGCGTTAGGTGA

Gene: Deide_02390: Transcriptional regulator of phenylacetic acid degradation, TetR family
*
Deinococcus geothermalis DSM 11300

Site:
position = -61
score = 4.84451
sequence = CAAACGGACGTTCACTTG

Gene: Dgeo_0117: Transcriptional regulator of phenylacetic acid degradation, TetR family
*
Deinococcus radiodurans R1

Site:
position = -68
score = 5.37927
sequence = CAAACGCCCGTTTGGTTG

Gene: DR2376: Transcriptional regulator of phenylacetic acid degradation, TetR family
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Transcriptional regulator of phenylacetic acid degradation, TetR family
 
CRON 2.
pccB
*
Deinococcus deserti VCD115

Site:
position = -31
score = 6.23732
sequence = CAAACGAGCGTTTGTTAG

Gene: Deide_14880: Propionyl-CoA carboxylase (EC 6.4.1.3)
*
Deinococcus geothermalis DSM 11300

Site:
position = -31
score = 6.38515
sequence = CTAACGGGCGTTTGTTAG

Gene: Dgeo_0811: Propionyl-CoA carboxylase (EC 6.4.1.3)
*
Deinococcus radiodurans R1

Site:
position = -31
score = 6.38515
sequence = CTAACGGGCGTTTGTTAG

Gene: DR1542: Propionyl-CoA carboxylase (EC 6.4.1.3)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4494: Propionyl-CoA carboxylase (EC 6.4.1.3)
 
Thermus thermophilus HB27

Gene: TTC1192: Propionyl-CoA carboxylase (EC 6.4.1.3)
Propionyl-CoA carboxylase (EC 6.4.1.3)
DR1543
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1

Gene: DR1543: hypothetical protein
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
hypothetical protein
bcd
 
Deinococcus deserti VCD115

Gene: Deide_14890: Butyryl-CoA dehydrogenase (EC 1.3.8.1)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_0812: Butyryl-CoA dehydrogenase (EC 1.3.8.1)
 
Deinococcus radiodurans R1

Gene: DR1544: Butyryl-CoA dehydrogenase (EC 1.3.8.1)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3905: Butyryl-CoA dehydrogenase (EC 1.3.8.1)
 
Thermus thermophilus HB27

Gene: TTC1575: Butyryl-CoA dehydrogenase (EC 1.3.8.1)
Butyryl-CoA dehydrogenase (EC 1.3.8.1)
 
CRON 3.
bkdA1
*
Deinococcus deserti VCD115

Site:
position = -87
score = 5.97311
sequence = CTAACGAACGTTAGATAG

Gene: Deide_23440: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
*
Deinococcus geothermalis DSM 11300

Site:
position = -90
score = 6.18017
sequence = CTAACGAGCGTTAGCTAG

Gene: Dgeo_2338: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
*
Deinococcus radiodurans R1

Site:
position = -49
score = 5.64397
sequence = CTAACGCTCGTTAGCTAG

Gene: DR0029: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4725: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
 
Thermus thermophilus HB27
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
bkdA2
 
Deinococcus deserti VCD115

Gene: Deide_23450: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2339: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Deinococcus radiodurans R1

Gene: DR0030: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4724: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Thermus thermophilus HB27
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
DR0031
 
Deinococcus deserti VCD115

Gene: Deide_23460: hypothetical protein
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2340: hypothetical protein
 
Deinococcus radiodurans R1

Gene: DR0031: hypothetical protein
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
hypothetical protein
bkdB
 
Deinococcus deserti VCD115

Gene: Deide_23470: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2341: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Deinococcus radiodurans R1

Gene: DR0032: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4722: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Thermus thermophilus HB27

Gene: TTC1754: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
CRON 4.
bcd2
*
Deinococcus deserti VCD115

Site:
position = -27
score = 5.95407
sequence = CTAACGGTCGTTTGGTAG

Gene: Deide_10580: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
*
Deinococcus geothermalis DSM 11300

Site:
position = -27
score = 6.17109
sequence = CTAACAAGCGTTTGGTAG

Gene: Dgeo_1179: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
*
Deinococcus radiodurans R1

Site:
position = -27
score = 5.76015
sequence = CTAACGCCCGTTTGGTAG

Gene: DR1255: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4675: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
 
Thermus thermophilus HB27

Gene: TTC1552: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
 
CRON 5.
mcm
*
Deinococcus deserti VCD115

Site:
position = -71
score = 5.8921
sequence = CTAACGGGCGTTAGTTTT

Gene: Deide_11350: Methylmalonyl-CoA mutase (EC 5.4.99.2)
*
Deinococcus geothermalis DSM 11300

Site:
position = -38
score = 6.07451
sequence = CTAACGAGCGTTTGTTTC

Gene: Dgeo_0862: Methylmalonyl-CoA mutase (EC 5.4.99.2)
*
Deinococcus radiodurans R1

Site:
position = -11
score = 5.63008
sequence = CAAACAAGCGTTTGTTTT

Gene: DR1189: Methylmalonyl-CoA mutase (EC 5.4.99.2)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3869: Methylmalonyl-CoA mutase (EC 5.4.99.2)
 
Thermus thermophilus HB27

Gene: TTC0677: Methylmalonyl-CoA mutase (EC 5.4.99.2)
Methylmalonyl-CoA mutase (EC 5.4.99.2)
 
CRON 6.
hmgcL
*
Deinococcus deserti VCD115

Site:
position = 6
score = 5.79762
sequence = GTAACGAACGTTCGTTTG

Gene: Deide_10010: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
*
Deinococcus geothermalis DSM 11300

Site:
position = -35
score = 5.61467
sequence = CCAACGAACGCTTGTTTG

Gene: Dgeo_1253: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
*
Deinococcus radiodurans R1

Site:
position = -32
score = 5.70708
sequence = CCAACAAACGTTCGTTTG

Gene: DR1240: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
maoC
 
Deinococcus deserti VCD115

Gene: Deide_10000: enoyl-CoA hydratase-like enzyme
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1254: enoyl-CoA hydratase-like enzyme
 
Deinococcus radiodurans R1

Gene: DR1239: enoyl-CoA hydratase-like enzyme
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
enoyl-CoA hydratase-like enzyme
 
CRON 7.
accB
*
Deinococcus deserti VCD115

Site:
position = -95
score = 4.49704
sequence = CAAACGACCGTTAGGTGA

Gene: Deide_03290: Biotin carboxyl carrier protein of acetyl-CoA carboxylase
*
Deinococcus geothermalis DSM 11300

Site:
position = -89
score = 5.27155
sequence = CTAACGACCGTTCGGGAG

Gene: Dgeo_0467: Biotin carboxyl carrier protein of acetyl-CoA carboxylase
*
Deinococcus radiodurans R1

Site:
position = -133
score = 5.73306
sequence = CAAACGGGCGTTAGGTTG

Gene: DR0118: Biotin carboxyl carrier protein of acetyl-CoA carboxylase
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3437: Biotin carboxyl carrier protein of acetyl-CoA carboxylase
 
Thermus thermophilus HB27

Gene: TTC0759: Biotin carboxyl carrier protein of acetyl-CoA carboxylase
Biotin carboxyl carrier protein of acetyl-CoA carboxylase
accC
 
Deinococcus deserti VCD115

Gene: Deide_03280: Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_0466: Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)
 
Deinococcus radiodurans R1

Gene: DR0117: Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3438: Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)
 
Thermus thermophilus HB27

Gene: TTC0758: Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)
 
CRON 8.
phbA
*
Deinococcus deserti VCD115

Site:
position = -37
score = 6.22358
sequence = CTAACGAGCGTTAGGTTG

Gene: Deide_01560: Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1441: Acetyl-CoA acetyltransferase (EC 2.3.1.9)
*
Deinococcus radiodurans R1

Site:
position = -37
score = 4.80962
sequence = CTAACGCTCGTTAGTCTC

Gene: DR1072: Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4092: Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Thermus thermophilus HB27

Gene: TTC0191: Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
CRON 9.
mcm2
 
Deinococcus deserti VCD115

Gene: Deide_08100: Methylmalonyl-CoA mutase (EC 5.4.99.2)
*
Deinococcus geothermalis DSM 11300

Site:
position = -55
score = 5.70646
sequence = CTAACGTGCGTTCGTTCG

Gene: Dgeo_1320: Methylmalonyl-CoA mutase (EC 5.4.99.2)
*
Deinococcus radiodurans R1

Site:
position = -55
score = 4.6469
sequence = CGAACGCTCGTTCGGTTC

Gene: DR1084: Methylmalonyl-CoA mutase (EC 5.4.99.2)
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Methylmalonyl-CoA mutase (EC 5.4.99.2)
 
CRON 10.
acsA
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1750: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
*
Deinococcus radiodurans R1

Site:
position = -69
score = 5.64526
sequence = CTCACAAACGTTCGTTAG

Gene: DR0460: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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