Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PaaR - Deinococcus-Thermus

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Deinococcus-Thermus
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus deserti VCD115
Deinococcus geothermalis DSM 11300
Deinococcus radiodurans R1
Thermus aquaticus Y51MC23 13 2
Thermus thermophilus HB27 13 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
paaR
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
*
Thermus aquaticus Y51MC23

Site:
position = -20
score = 6.41068
sequence = CTAACAAGCGATCGTTAG

Gene: TaqDRAFT_5253: Transcriptional regulator of phenylacetic acid degradation, TetR family
*
Thermus thermophilus HB27

Site:
position = -20
score = 6.14488
sequence = CTAACAAACGACCGTTAG

Gene: TTC0609: Transcriptional regulator of phenylacetic acid degradation, TetR family
Transcriptional regulator of phenylacetic acid degradation, TetR family
paaA
 
Deinococcus deserti VCD115

Gene: Deide_04560: Phenylacetate-CoA oxygenase, PaaA subunit
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1918: Phenylacetate-CoA oxygenase, PaaA subunit
 
Deinococcus radiodurans R1

Gene: DR2386: Phenylacetate-CoA oxygenase, PaaA subunit
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5254: Phenylacetate-CoA oxygenase, PaaA subunit
 
Thermus thermophilus HB27

Gene: TTC0608: Phenylacetate-CoA oxygenase, PaaA subunit
Phenylacetate-CoA oxygenase, PaaA subunit
paaB
 
Deinococcus deserti VCD115

Gene: Deide_04570: Phenylacetate-CoA oxygenase, PaaB subunit
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1917: Phenylacetate-CoA oxygenase, PaaB subunit
 
Deinococcus radiodurans R1

Gene: DR2385: Phenylacetate-CoA oxygenase, PaaB subunit
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5255: Phenylacetate-CoA oxygenase, PaaB subunit
 
Thermus thermophilus HB27

Gene: TTC0607: Phenylacetate-CoA oxygenase, PaaB subunit
Phenylacetate-CoA oxygenase, PaaB subunit
paaC
 
Deinococcus deserti VCD115

Gene: Deide_04580: Phenylacetate-CoA oxygenase, PaaC subunit
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1916: Phenylacetate-CoA oxygenase, PaaC subunit
 
Deinococcus radiodurans R1

Gene: DR2384: Phenylacetate-CoA oxygenase, PaaC subunit
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5256: Phenylacetate-CoA oxygenase, PaaC subunit
 
Thermus thermophilus HB27

Gene: TTC0606: Phenylacetate-CoA oxygenase, PaaC subunit
Phenylacetate-CoA oxygenase, PaaC subunit
paaD
 
Deinococcus deserti VCD115

Gene: Deide_04590: Phenylacetate-CoA oxygenase, PaaD subunit
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1915: Phenylacetate-CoA oxygenase, PaaD subunit
 
Deinococcus radiodurans R1

Gene: DR2383: Phenylacetate-CoA oxygenase, PaaD subunit
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5257: Phenylacetate-CoA oxygenase, PaaD subunit
 
Thermus thermophilus HB27

Gene: TTC0605: Phenylacetate-CoA oxygenase, PaaD subunit
Phenylacetate-CoA oxygenase, PaaD subunit
paaZ
 
Deinococcus deserti VCD115

Gene: Deide_04600: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1913: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
Deinococcus radiodurans R1

Gene: DR2381: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5258: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
Thermus thermophilus HB27

Gene: TTC0604: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
 
CRON 2.
livK
 
Deinococcus deserti VCD115

Gene: Deide_2p00130: Putative branched-chain amino acid ABC transporter, substrate-binding component
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1

Gene: DRA0263: Putative branched-chain amino acid ABC transporter, substrate-binding component
*
Thermus aquaticus Y51MC23

Site:
position = -60
score = 4.7678
sequence = GAAGCAAACGTTAGTTAG

Gene: TaqDRAFT_5266: Putative branched-chain amino acid ABC transporter, substrate-binding component
*
Thermus thermophilus HB27

Site:
position = -61
score = 4.93935
sequence = CGAACGGCCGTTAGTTTG

Gene: TTC0597: Putative branched-chain amino acid ABC transporter, substrate-binding component
Putative branched-chain amino acid ABC transporter, substrate-binding component
livH
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5265: Putative branched-chain amino acid ABC transporter, permease component
 
Thermus thermophilus HB27

Gene: TTC0598: Putative branched-chain amino acid ABC transporter, permease component
Putative branched-chain amino acid ABC transporter, permease component
livF
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5264: Putative branched-chain amino acid ABC transporter, permease component 2
 
Thermus thermophilus HB27

Gene: TTC0599: Putative branched-chain amino acid ABC transporter, permease component 2
Putative branched-chain amino acid ABC transporter, permease component 2
livM
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5263: Putative branched-chain amino acid ABC transporter, ATPase component
 
Thermus thermophilus HB27

Gene: TTC0600: Putative branched-chain amino acid ABC transporter, ATPase component
Putative branched-chain amino acid ABC transporter, ATPase component
paaI
 
Deinococcus deserti VCD115

Gene: Deide_02060: Phenylacetic acid degradation protein PaaI, thioesterase
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_0297: Phenylacetic acid degradation protein PaaI, thioesterase
 
Deinococcus radiodurans R1

Gene: DR2321: Phenylacetic acid degradation protein PaaI, thioesterase
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5262: Phenylacetic acid degradation protein PaaI, thioesterase
 
Thermus thermophilus HB27

Gene: TTC0601: Phenylacetic acid degradation protein PaaI, thioesterase
Phenylacetic acid degradation protein PaaI, thioesterase
paaK
 
Deinococcus deserti VCD115

Gene: Deide_2p00170: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2409: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
 
Deinococcus radiodurans R1

Gene: DRA0256: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5261: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
 
Thermus thermophilus HB27

Gene: TTC0602: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaY
 
Deinococcus deserti VCD115

Gene: Deide_20170: thioesterase superfamily protein
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2156: thioesterase superfamily protein
 
Deinococcus radiodurans R1

Gene: DR2608: thioesterase superfamily protein
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5260: thioesterase superfamily protein
 
Thermus thermophilus HB27

Gene: TTC0603: thioesterase superfamily protein
thioesterase superfamily protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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