Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog RbsR - Corynebacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129 2 1
Corynebacterium efficiens YS-314 5 2
Corynebacterium glutamicum ATCC 13032 10 3
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rbsR
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -31
score = 5.99665
sequence = TACGCAAACGTTTGCAGA

Gene: DIP0656: Transcriptional repressor of ribose utilization, LacI family
*
Corynebacterium efficiens YS-314

Site:
position = -18
score = 5.42051
sequence = GGTGCAAACGATTGCCCT

Gene: CE1349: Transcriptional repressor of ribose utilization, LacI family
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -68
score = 6.09762
sequence = AATGCAATCGATTGCATT

Gene: cg1410: Transcriptional repressor of ribose utilization, LacI family
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Transcriptional repressor of ribose utilization, LacI family
rbsA
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314
 
Corynebacterium glutamicum ATCC 13032

Gene: cg1411: Ribose ABC transporter, ATP-binding protein
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Ribose ABC transporter, ATP-binding protein
rbsC
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314
 
Corynebacterium glutamicum ATCC 13032

Gene: cg1412: Ribose ABC transporter, permease protein
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Ribose ABC transporter, permease protein
rbsB
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314
 
Corynebacterium glutamicum ATCC 13032

Gene: cg1413: Ribose ABC transporter, substrate-binding protein
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Ribose ABC transporter, substrate-binding protein
rbsD
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314
 
Corynebacterium glutamicum ATCC 13032

Gene: cg1414: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
uriR
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
*
Corynebacterium efficiens YS-314

Site:
position = -49
score = 5.33109
sequence = AATGTAAACGTTTACATC

Gene: CE1485: Pyrimidine utilization transcriptional regulator UriR, LacI family
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -61
score = 5.85475
sequence = AATGTAATCGTTTGCAGC

Gene: cg1547: Pyrimidine utilization transcriptional regulator UriR, LacI family
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Pyrimidine utilization transcriptional regulator UriR, LacI family
rbsK
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP0655: Ribokinase (EC 2.7.1.15)
 
Corynebacterium efficiens YS-314

Gene: CE1484: Ribokinase (EC 2.7.1.15)
*2
Corynebacterium glutamicum ATCC 13032

Site:
position = -37
score = 6.05362
sequence = TATGAAAACGTTTGCATA

Gene: cg2554: Ribokinase (EC 2.7.1.15)

Gene: cg1546: Ribokinase (EC 2.7.1.15)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Ribokinase (EC 2.7.1.15)
uriT
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE1483: Uridine transporter
 
Corynebacterium glutamicum ATCC 13032

Gene: cg1545: Uridine transporter
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Uridine transporter
uriH
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE1482: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
 
Corynebacterium glutamicum ATCC 13032

Gene: cg1543: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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