Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SAM_alpha - Rhizobiales

Properties
Regulator type: RNA regulatory element
Name: SAM_alpha
RFAM: RF00521
Regulation mode:
Biological process: Methionine biosynthesis
Effector: S-adenosylmethionine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Sinorhizobium meliloti 1021 2 2
Rhizobium sp. NGR234 2 2
Rhizobium leguminosarum bv. viciae 3841 2 2
Rhizobium etli CFN 42 2 2
Agrobacterium tumefaciens str. C58 (Cereon) 2 2
Mesorhizobium sp. BNC1 2 2
Mesorhizobium loti MAFF303099 3 2
Brucella melitensis 16M 1 1
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009 3 2
Bradyrhizobium japonicum USDA 110 3 2
Bradyrhizobium sp. BTAi1 3 2
Nitrobacter winogradskyi Nb-255 3 2
Azorhizobium caulinodans ORS 571 1 1
Xanthobacter autotrophicus Py2 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metY
*
Sinorhizobium meliloti 1021

Site:
position = -123
score = 83.24
sequence = AGCTTTATCCCGTGG...

Gene: SMc02217: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Rhizobium sp. NGR234

Site:
position = -123
score = 83.24
sequence = AGCTTTATCCCGTGG...

Gene: NGR_c01560: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -122
score = 80.92
sequence = AGAATTATCCCGTGG...

Gene: RL0554: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Rhizobium etli CFN 42

Site:
position = -122
score = 80.92
sequence = AGAATTATCCCGTGG...

Gene: RHE_CH00522: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -123
score = 80.16
sequence = AAGCTTATCCCGTGG...

Gene: Atu0432: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Mesorhizobium sp. BNC1

Site:
position = -118
score = 81.75
sequence = TTTATCCCCGTGGTG...

Gene: Meso_0098: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Mesorhizobium loti MAFF303099

Site:
position = -134
score = 73.86
sequence = GTCGTTATCCCGTGG...

Gene: mll5651: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Brucella melitensis 16M

Site:
position = -160
score = 80.47
sequence = ACCTGTTCCGTGGTG...

Gene: BMEI1617: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -153
score = 86.23
sequence = ACTTATCCCGTGGTG...

Gene: RPA4766: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Bradyrhizobium japonicum USDA 110

Site:
position = -90
score = 84.74
sequence = TCACTTATCCCGTGG...

Gene: bll1105: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Bradyrhizobium sp. BTAi1

Site:
position = -157
score = 86.23
sequence = GCACTTATCCCGTGG...

Gene: BBta_0768: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Nitrobacter winogradskyi Nb-255

Site:
position = -152
score = 86.29
sequence = ATACGTCTCCCGTGG...

Gene: Nwi_0139: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Azorhizobium caulinodans ORS 571

Site:
position = -131
score = 58.54
sequence = CCCCGGCTCGTGGAG...

Gene: AZC_4021: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Xanthobacter autotrophicus Py2

Site:
position = -162
score = 64.06
sequence = GCCGCTCACTCGTGG...

Gene: Xaut_0471: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
 
CRON 2.
metA
*
Sinorhizobium meliloti 1021

Site:
position = -72
score = 83.51
sequence = AAATGATCCGTGGTG...

Gene: SMc03797: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Rhizobium sp. NGR234

Site:
position = -138
score = 79.51
sequence = AGCGTTCCTGTGGTG...

Gene: NGR_c31610: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -126
score = 78.56
sequence = TTAAGGCCTCCGTGG...

Gene: RL4606: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Rhizobium etli CFN 42

Site:
position = -191
score = 79.24
sequence = AGGCACTCCGTGGTG...

Gene: RHE_CH04033: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -159
score = 71.15
sequence = AACGCCTCAGTGGTG...

Gene: Atu2718: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Mesorhizobium sp. BNC1

Site:
position = -132
score = 77.8
sequence = CAGGCGAACCCGTGG...

Gene: Meso_3083: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Homoserine O-succinyltransferase (EC 2.3.1.46)
 
CRON 3.
metX
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
*
Mesorhizobium loti MAFF303099

Site:
position = -182
score = 77.31
sequence = AACAGTTCCGTGGTG...

Gene: mlr3538: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -184
score = 80.15
sequence = AACCAGAACTCGTGG...

Gene: RPA4437: Homoserine O-acetyltransferase (EC 2.3.1.31)
*
Bradyrhizobium japonicum USDA 110

Site:
position = -170
score = 79.68
sequence = GCCTGTTCCGTGGTC...

Gene: blr1399: Homoserine O-acetyltransferase (EC 2.3.1.31)
*
Bradyrhizobium sp. BTAi1

Site:
position = -161
score = 80.81
sequence = GCTCGTTCCGTGGTC...

Gene: BBta_1186: Homoserine O-acetyltransferase (EC 2.3.1.31)
*
Nitrobacter winogradskyi Nb-255

Site:
position = -171
score = 81.86
sequence = TCCTGTTCCGTGGTC...

Gene: Nwi_0585: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0229: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1909: Homoserine O-acetyltransferase (EC 2.3.1.31)
Homoserine O-acetyltransferase (EC 2.3.1.31)
metW
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mlr3539: Methionine biosynthesis protein MetW
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA4436: Methionine biosynthesis protein MetW
 
Bradyrhizobium japonicum USDA 110

Gene: blr1400: Methionine biosynthesis protein MetW
 
Bradyrhizobium sp. BTAi1

Gene: BBta_1187: Methionine biosynthesis protein MetW
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_0586: Methionine biosynthesis protein MetW
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0228: Methionine biosynthesis protein MetW
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1910: Methionine biosynthesis protein MetW
Methionine biosynthesis protein MetW
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD