Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Rhizobiales

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Sinorhizobium meliloti 1021 1 1
Rhizobium sp. NGR234 1 1
Rhizobium leguminosarum bv. viciae 3841 3 3
Rhizobium etli CFN 42 2 2
Agrobacterium tumefaciens str. C58 (Cereon) 1 1
Mesorhizobium sp. BNC1
Mesorhizobium loti MAFF303099 1 1
Brucella melitensis 16M 1 1
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009
Bradyrhizobium japonicum USDA 110 1 1
Bradyrhizobium sp. BTAi1 1 1
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribN
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -238
score = 114.43
sequence = TCTGTTCTCAGGGCG...

Gene: RL1692: Riboflavin permease, EamA family
*
Rhizobium etli CFN 42

Site:
position = -299
score = 112.39
sequence = GCTGTTCTCAGGGCG...

Gene: RHE_CH01591: Riboflavin permease, EamA family
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Riboflavin permease, EamA family
 
CRON 2.
ribB
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -276
score = 120.14
sequence = AATGTTCTCGGGGCG...

Gene: RL2726: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Rhizobium etli CFN 42
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -270
score = 112.56
sequence = GTTGTTCTCAGGGCG...

Gene: Atu1895: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
3,4-dihydroxy-2-butanone 4-phosphate synthase
 
CRON 3.
ribH2
*
Sinorhizobium meliloti 1021

Site:
position = -200
score = 106.7
sequence = AGCGTTCTCAGGGCG...

Gene: SMc01609: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
*
Rhizobium sp. NGR234

Site:
position = -252
score = 97.78
sequence = CGCGTTCTCAGGGCG...

Gene: NGR_c21540: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -219
score = 116.8
sequence = GCCGTTCTCAGGGCG...

Gene: RL3153: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
*
Rhizobium etli CFN 42

Site:
position = -221
score = 117.11
sequence = GCCGTTCTCAGGGCG...

Gene: RHE_CH02688: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
*
Mesorhizobium loti MAFF303099

Site:
position = -227
score = 121.31
sequence = TTAAAGTTCTCAGGG...

Gene: mll7281: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
*
Brucella melitensis 16M

Site:
position = -241
score = 119.97
sequence = GGCTTGTTCTCGGGG...

Gene: BMEII0589: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
*
Bradyrhizobium japonicum USDA 110

Site:
position = -252
score = 108.55
sequence = GATAAGTTCTCAGGG...

Gene: bll7452: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
*
Bradyrhizobium sp. BTAi1

Site:
position = -271
score = 97.58
sequence = CATGTTCTCAGGGCG...

Gene: BBta_1745: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD