Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SAM - Chlorobiales

Properties
Regulator type: RNA regulatory element
Name: SAM
RFAM: RF00162
Regulation mode:
Biological process: Methionine biosynthesis
Effector: S-adenosylmethionine
Phylum: Chlorobiales
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroherpeton thalassium ATCC 35110 2 1
Pelodictyon phaeoclathratiforme BU-1 3 2
Chlorobium ferrooxidans DSM 13031 3 2
Chlorobium phaeobacteroides DSM 266 2 1
Chlorobium limicola DSM 245 2 1
Prosthecochloris vibrioformis DSM 265 2 1
Pelodictyon luteolum DSM 273 3 2
Chlorobaculum parvum NCIB 8327 2 1
Chlorobium phaeobacteroides BS1 2 1
Prosthecochloris aestuarii DSM 271 2 1
Chlorobium chlorochromatii CaD3 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metI
 
Chloroherpeton thalassium ATCC 35110
*
Pelodictyon phaeoclathratiforme BU-1

Site:
position = -101
score = 28.18
sequence = CATCATCAAAAAAGG...

Gene: Ppha_2110: Cystathionine gamma-lyase (EC 4.4.1.1)
*
Chlorobium ferrooxidans DSM 13031

Site:
position = -134
score = 36.01
sequence = GGTCATCAAGAAAGG...

Gene: CferDRAFT_0404: Cystathionine gamma-lyase (EC 4.4.1.1)
 
Chlorobium phaeobacteroides DSM 266
 
Chlorobium limicola DSM 245
 
Prosthecochloris vibrioformis DSM 265
*
Pelodictyon luteolum DSM 273

Site:
position = -293
score = 49.25
sequence = ACAGTCATCAAGAAA...

Gene: Plut_1548: Cystathionine gamma-lyase (EC 4.4.1.1)
 
Chlorobaculum parvum NCIB 8327
 
Chlorobium phaeobacteroides BS1
 
Prosthecochloris aestuarii DSM 271
 
Chlorobium chlorochromatii CaD3
Cystathionine gamma-lyase (EC 4.4.1.1)
 
CRON 2.
metY
*
Chloroherpeton thalassium ATCC 35110

Site:
position = -307
score = 75.58
sequence = TGTCATCAAGAAAGG...

Gene: Ctha_1280: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Pelodictyon phaeoclathratiforme BU-1

Site:
position = -231
score = 78.97
sequence = TATCATCCAGAAAGG...

Gene: Ppha_0929: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Chlorobium ferrooxidans DSM 13031

Site:
position = -113
score = 82.73
sequence = GCTATCATCGAGAAA...

Gene: CferDRAFT_1079: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Chlorobium phaeobacteroides DSM 266

Site:
position = -222
score = 78.89
sequence = GCTGTCATCGAGAAA...

Gene: Cpha266_1767: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Chlorobium limicola DSM 245

Site:
position = -226
score = 76.95
sequence = GCTATCATCGAGAAA...

Gene: Clim_1825: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Prosthecochloris vibrioformis DSM 265

Site:
position = -168
score = 73.24
sequence = GCTATCATCGAGAAA...

Gene: Cvib_1184: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Pelodictyon luteolum DSM 273

Site:
position = -234
score = 67.51
sequence = TATCATCGAGAAAGG...

Gene: Plut_0592: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Chlorobaculum parvum NCIB 8327

Site:
position = -214
score = 84.68
sequence = TATCATCCAGAAAGG...

Gene: Cpar_0621: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Chlorobium phaeobacteroides BS1

Site:
position = -98
score = 73.08
sequence = TATCATCCAGAAAGG...

Gene: Cphamn1_0819: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Prosthecochloris aestuarii DSM 271

Site:
position = -220
score = 70.18
sequence = TGTCATCCAGAAAGG...

Gene: Paes_0729: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
 
Chlorobium chlorochromatii CaD3
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
metX
 
Chloroherpeton thalassium ATCC 35110

Gene: Ctha_1281: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_0930: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1078: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_1766: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Chlorobium limicola DSM 245

Gene: Clim_1824: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_1183: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Pelodictyon luteolum DSM 273

Gene: Plut_0593: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_0622: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_0820: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Prosthecochloris aestuarii DSM 271

Gene: Paes_0730: Homoserine O-acetyltransferase (EC 2.3.1.31)
*
Chlorobium chlorochromatii CaD3

Site:
position = -267
score = 72.75
sequence = TATCATCCAGAAAGG...

Gene: Cag_1206: Homoserine O-acetyltransferase (EC 2.3.1.31)
Homoserine O-acetyltransferase (EC 2.3.1.31)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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