Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GenR - Corynebacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: activator (repressor)
Biological process: 3-hydroxybenzoate degradation
Effector: Gentisate; 3-hydroxybenzoate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314 6 3
Corynebacterium glutamicum ATCC 13032 6 3
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
genR
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
*
Corynebacterium efficiens YS-314

Site:
position = -11
score = 5.61768
sequence = GATTCCTCTATGTGGAAAG

Gene: CE2861: 3-hydroxybenzoate degradation transcriptional regulator, IclR family
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -26
score = 5.39701
sequence = GATTCCGCTATCTGGAAAG

Gene: cg3352: 3-hydroxybenzoate degradation transcriptional regulator, IclR family
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
3-hydroxybenzoate degradation transcriptional regulator, IclR family
 
CRON 2.
genK
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
*
Corynebacterium efficiens YS-314

Site:
position = -57
score = 5.83774
sequence = CTTTCCACATAGAGGAATC

Gene: CE2862: Gentisate transporter, MFS family
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -90
score = 5.68516
sequence = CTTTCCAGATAGCGGAATC

Gene: cg3353: Gentisate transporter, MFS family
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Gentisate transporter, MFS family
genH
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE2863: 3-hydroxybenzoate 6-hydroxylase
 
Corynebacterium glutamicum ATCC 13032

Gene: cg3354: 3-hydroxybenzoate 6-hydroxylase
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
3-hydroxybenzoate 6-hydroxylase
 
CRON 3.
genD
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
*
Corynebacterium efficiens YS-314

Site:
position = -102
score = 5.74705
sequence = ATTTCCGCATAGCGGAAAC

Gene: CE2860: Gentisate 1,2-dioxygenase (EC 1.13.11.4)
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -166
score = 6.14157
sequence = GATTCCACATAGCGGAATT

Gene: cg3351: Gentisate 1,2-dioxygenase (EC 1.13.11.4)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Gentisate 1,2-dioxygenase (EC 1.13.11.4)
genF
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE2859: Fumarylpyruvate hydrolase
 
Corynebacterium glutamicum ATCC 13032

Gene: cg3350: Fumarylpyruvate hydrolase
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Fumarylpyruvate hydrolase
genM
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE2858: Maleylpyruvate isomerase, mycothiol-dependent (EC 5.2.1.4)
 
Corynebacterium glutamicum ATCC 13032

Gene: cg3349: Maleylpyruvate isomerase, mycothiol-dependent (EC 5.2.1.4)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Maleylpyruvate isomerase, mycothiol-dependent (EC 5.2.1.4)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD