Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog ClgR - Corynebacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: XRE
Regulation mode: activator
Biological process: Proteolysis
Effector: DNA damage
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 39 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium amycolatum SK46 5 4
Corynebacterium aurimucosum ATCC 700975 6 5
Corynebacterium diphtheriae NCTC 13129 7 6
Corynebacterium efficiens YS-314 8 6
Corynebacterium glutamicum ATCC 13032 9 7
Corynebacterium jeikeium K411 7 5
Corynebacterium kroppenstedtii DSM 44385 3 2
Corynebacterium urealyticum DSM 7109 5 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
groL2
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_1328: Heat shock protein 60 family chaperone GroEL
*
Corynebacterium aurimucosum ATCC 700975

Site:
position = -210
score = 5.33902
sequence = GTTCGCTTATAGCGTTC

Gene: cauri_2263: Heat shock protein 60 family chaperone GroEL
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -238
score = 4.45551
sequence = TTACGCTGACAGCGATA

Gene: DIP2020: Heat shock protein 60 family chaperone GroEL
 
Corynebacterium efficiens YS-314

Gene: CE2561: Heat shock protein 60 family chaperone GroEL
 
Corynebacterium glutamicum ATCC 13032

Gene: cg3011: Heat shock protein 60 family chaperone GroEL
 
Corynebacterium jeikeium K411

Gene: jk0267: Heat shock protein 60 family chaperone GroEL
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1667: Heat shock protein 60 family chaperone GroEL
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1716: Heat shock protein 60 family chaperone GroEL
Heat shock protein 60 family chaperone GroEL
 
CRON 2.
hflX
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_0851: GTPase
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_1484: GTPase
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -72
score = 4.79406
sequence = GTTCGCTGTCAGCGAGA

Gene: DIP1439: GTPase
*
Corynebacterium efficiens YS-314

Site:
position = -64
score = 5.46282
sequence = GTTCGCTACCAGCGTTG

Gene: CE1833: GTPase
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -65
score = 5.11574
sequence = GATCGCTCACGGCGTTG

Gene: cg2126: GTPase
 
Corynebacterium jeikeium K411

Gene: jk1108: GTPase
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1096: GTPase
 
Corynebacterium urealyticum DSM 7109

Gene: cur_0881: GTPase
GTPase
 
CRON 3.
ptrB
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_1410: Prolyl oligopeptidase
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_2184: Prolyl oligopeptidase
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1926: Prolyl oligopeptidase
 
Corynebacterium efficiens YS-314

Gene: CE2486: Prolyl oligopeptidase
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -59
score = 4.00276
sequence = TGTCGCCAATGGCGAAC

Gene: cg2873: Prolyl oligopeptidase
 
Corynebacterium jeikeium K411

Gene: jk0351: Prolyl oligopeptidase
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0370: Prolyl oligopeptidase
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1624: Prolyl oligopeptidase
Prolyl oligopeptidase
 
CRON 4.
cg0297
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_2095: Conserved hypothetical protein
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_0175: Conserved hypothetical protein
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP0260: Conserved hypothetical protein
*
Corynebacterium efficiens YS-314

Site:
position = -61
score = 4.75542
sequence = GTAAGCCGAGAGCGAAC

Gene: CE0210: Conserved hypothetical protein
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -99
score = 4.75542
sequence = GTAAGCCGAGAGCGAAC

Gene: cg0297: Conserved hypothetical protein
*
Corynebacterium jeikeium K411

Site:
position = -126
score = 4.59708
sequence = GTTCGCTAAGCGTGAAC

Gene: jk2011: Conserved hypothetical protein
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0143: Conserved hypothetical protein
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1912: Conserved hypothetical protein
Conserved hypothetical protein
recR
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_2094: Recombination protein RecR
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_0176: Recombination protein RecR
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP0261: Recombination protein RecR
 
Corynebacterium efficiens YS-314

Gene: CE0211: Recombination protein RecR
 
Corynebacterium glutamicum ATCC 13032

Gene: cg0298: Recombination protein RecR
 
Corynebacterium jeikeium K411

Gene: jk2010: Recombination protein RecR
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0142: Recombination protein RecR
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1911: Recombination protein RecR
Recombination protein RecR
 
CRON 5.
ylbL
*
Corynebacterium amycolatum SK46

Site:
position = -79
score = 4.66253
sequence = CTTCGCGCCCAGCGAAC

Gene: CORAM0001_1222: Lon-like protease with PDZ domain
*
Corynebacterium aurimucosum ATCC 700975

Site:
position = -47
score = 4.8483
sequence = CAACGCTGAGAGCGAAC

Gene: cauri_0706: Lon-like protease with PDZ domain
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -34
score = 4.7657
sequence = CAACGCTGTCAGCGAAC

Gene: DIP0730: Lon-like protease with PDZ domain
*
Corynebacterium efficiens YS-314

Site:
position = -30
score = 4.7657
sequence = CAACGCTGTCAGCGAAC

Gene: CE0799: Lon-like protease with PDZ domain
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -39
score = 4.50077
sequence = CAACGCTGTAAGCGAAC

Gene: cg0893: Lon-like protease with PDZ domain
*
Corynebacterium jeikeium K411

Site:
position = -76
score = 4.75787
sequence = GTGTGCTGAGAGCGAAC

Gene: jk1605: Lon-like protease with PDZ domain
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1469: Lon-like protease with PDZ domain
*
Corynebacterium urealyticum DSM 7109

Site:
position = -127
score = 4.49294
sequence = GTGTGCTGTGAGCGAAC

Gene: cur_0510: Lon-like protease with PDZ domain
Lon-like protease with PDZ domain
 
CRON 6.
clpP1
*
Corynebacterium amycolatum SK46

Site:
position = -107
score = 4.53062
sequence = CAACGCTTATAGCGAAC

Gene: CORAM0001_0005: Clp protease (subunit 1)
*
Corynebacterium aurimucosum ATCC 700975

Site:
position = -91
score = 4.70408
sequence = CAACGCTCATAGCGAAC

Gene: cauri_1890: Clp protease (subunit 1)
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -107
score = 4.70142
sequence = CGACGCTGAGAGCGAAC

Gene: DIP1792: Clp protease (subunit 1)
*
Corynebacterium efficiens YS-314

Site:
position = -107
score = 4.45941
sequence = AAACGCTGTTAGCGAAC

Gene: CE2312: Clp protease (subunit 1)
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -110
score = 4.72434
sequence = AAACGCTGATAGCGAAC

Gene: cg2645: Clp protease (subunit 1)
*
Corynebacterium jeikeium K411

Site:
position = -111
score = 5.61438
sequence = GTGCGCTGACAGCGAAC

Gene: jk0544: Clp protease (subunit 1)
*
Corynebacterium kroppenstedtii DSM 44385

Site:
position = -98
score = 5.22025
sequence = GCACGCTAACAGCGAAC

Gene: ckrop_1372: Clp protease (subunit 1)
*
Corynebacterium urealyticum DSM 7109

Site:
position = -102
score = 5.0687
sequence = GTGCGCTTAAAGCGAAC

Gene: cur_1380: Clp protease (subunit 1)
Clp protease (subunit 1)
clpP2
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_0006: Clp protease (subunit 2)
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_1889: Clp protease (subunit 2)
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1791: Clp protease (subunit 2)
 
Corynebacterium efficiens YS-314

Gene: CE2311: Clp protease (subunit 2)
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2644: Clp protease (subunit 2)
 
Corynebacterium jeikeium K411

Gene: jk0545: Clp protease (subunit 2)
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1371: Clp protease (subunit 2)
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1379: Clp protease (subunit 2)
Clp protease (subunit 2)
 
CRON 7.
cg0892
*
Corynebacterium amycolatum SK46

Site:
position = -77
score = 4.87102
sequence = GTTCGCTGGGCGCGAAG

Gene: CORAM0001_1223: Conserved hypothetical protein
*
Corynebacterium aurimucosum ATCC 700975

Site:
position = 9
score = 5.29576
sequence = GTTCGCTCTCAGCGTTG

Gene: cauri_0705: Conserved hypothetical protein
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -63
score = 5.66797
sequence = GTTCGCTGACAGCGTTG

Gene: DIP0729: Conserved hypothetical protein
*
Corynebacterium efficiens YS-314

Site:
position = -54
score = 5.66797
sequence = GTTCGCTGACAGCGTTG

Gene: CE0798: Conserved hypothetical protein
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -42
score = 5.38722
sequence = GTTCGCTTACAGCGTTG

Gene: cg0892: Conserved hypothetical protein
*
Corynebacterium jeikeium K411

Site:
position = -75
score = 4.92485
sequence = GTTCGCTCTCAGCACAC

Gene: jk1606: Conserved hypothetical protein
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1470: Conserved hypothetical protein
*
Corynebacterium urealyticum DSM 7109

Site:
position = 24
score = 5.18978
sequence = GTTCGCTCACAGCACAC

Gene: cur_0509: Conserved hypothetical protein
Conserved hypothetical protein
 
CRON 8.
clpC
*
Corynebacterium amycolatum SK46

Site:
position = -111
score = 5.5177
sequence = GTTCGCTACTGGCGTAC

Gene: CORAM0001_1267: Clp protease
*
Corynebacterium aurimucosum ATCC 700975

Site:
position = -133
score = 5.73696
sequence = GTTCGCTACCGGCGTAC

Gene: cauri_2229: Clp protease
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -152
score = 5.59826
sequence = GTTCGCTGCTGGCGTAC

Gene: DIP1983: Clp protease
*
Corynebacterium efficiens YS-314

Site:
position = -175
score = 5.47203
sequence = GTTCGCTACAGGCGTAC

Gene: CE2529: Clp protease
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -176
score = 5.47203
sequence = GTTCGCTACAGGCGTAC

Gene: cg2963: Clp protease
*
Corynebacterium jeikeium K411

Site:
position = -209
score = 5.94211
sequence = GTTCGCTGACGGCGTAC

Gene: jk0299: Clp protease
*
Corynebacterium kroppenstedtii DSM 44385

Site:
position = -274
score = 5.71024
sequence = GTTCGCTCCCGGCGTAC

Gene: ckrop_0337: Clp protease
*
Corynebacterium urealyticum DSM 7109

Site:
position = -202
score = 5.35444
sequence = GTTCGCTAGGGGCGTAC

Gene: cur_1684: Clp protease
Clp protease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD