Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DeoR - Lactobacillaceae

Properties
Regulator type: Transcription factor
Regulator family: SorC
Regulation mode: repressor
Biological process: Deoxynucleoside utilization
Effector: Deoxyribose-5-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367 5 1
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956 4 2
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1 4 1
Lactobacillus reuteri JCM 1112 6 2
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K 7 1
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
deoC
 
Lactobacillus acidophilus NCFM
*
Lactobacillus brevis ATCC 367

Site:
position = -19
score = 5.71383
sequence = ATGAAAGGGGTTTCAT

Gene: LVIS_1595: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
 
Lactobacillus casei ATCC 334

Gene: LSEI_0278: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
*
Lactobacillus fermentum IFO 3956

Site:
position = -37
score = 5.71383
sequence = ATGAAAGCGTATTCAA

Gene: LAF_1740: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -21
score = 5.41437
sequence = AAGAAAGGGGTTTCAT

Gene: lp_0497: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
*
Lactobacillus reuteri JCM 1112

Site:
position = -39
score = 5.57973
sequence = ATGAAAACGCATTCAA

Gene: LAR_0105: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
 
Lactobacillus rhamnosus GG

Gene: LGG_00321: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -34
score = 5.11491
sequence = TTGAAAGCGTTAACAA

Gene: LSA0795: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Deoxyribose-phosphate aldolase (EC 4.1.2.4)
deoB
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1594: Phosphopentomutase (EC 5.4.2.7)
 2
Lactobacillus casei ATCC 334

Gene: LSEI_0279: Phosphopentomutase (EC 5.4.2.7)

Gene: LSEI_2341: Phosphopentomutase (EC 5.4.2.7)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0106: Phosphopentomutase (EC 5.4.2.7)
 
Lactobacillus rhamnosus GG

Gene: LGG_00322: Phosphopentomutase (EC 5.4.2.7)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0796: Phosphopentomutase (EC 5.4.2.7)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Phosphopentomutase (EC 5.4.2.7)
deoD
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1593: Purine nucleoside phosphorylase (EC 2.4.2.1)
 
Lactobacillus casei ATCC 334

Gene: LSEI_0280: Purine nucleoside phosphorylase (EC 2.4.2.1)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0108: Purine nucleoside phosphorylase (EC 2.4.2.1)
 
Lactobacillus rhamnosus GG

Gene: LGG_00323: Purine nucleoside phosphorylase (EC 2.4.2.1)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0797: Purine nucleoside phosphorylase (EC 2.4.2.1)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Purine nucleoside phosphorylase (EC 2.4.2.1)
nupC
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2071: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0074: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_3204: Pyrimidine-nucleoside Na+(H+) cotransporter
*
Lactobacillus reuteri JCM 1112

Site:
position = -251
score = 5.22327
sequence = ATGACAGCGTTTTCAT

Gene: LAR_0095: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Lactobacillus rhamnosus GG
 2
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0798: Pyrimidine-nucleoside Na+(H+) cotransporter

Gene: LSA0287: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1735: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0796: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1727: Pyrimidine-nucleoside Na+(H+) cotransporter
Pyrimidine-nucleoside Na+(H+) cotransporter
pbuO
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2070: Guanine/hypoxanthine permease
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0799: Guanine/hypoxanthine permease
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1025: Guanine/hypoxanthine permease
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Guanine/hypoxanthine permease
deoR
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1592: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
*
Lactobacillus fermentum IFO 3956

Site:
position = -88
score = 5.28026
sequence = TTGAATACGCTTTCAT

Gene: LAF_1739: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0495: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0109: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0800: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Deoxynucleoside utilization transcriptional regulator DeoR, SorC family
pdp
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1591: Thymidine phosphorylase
 
Lactobacillus casei ATCC 334

Gene: LSEI_2206: Thymidine phosphorylase
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0107: Thymidine phosphorylase
 
Lactobacillus rhamnosus GG

Gene: LGG_02209: Thymidine phosphorylase
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0801: Thymidine phosphorylase
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
lp_0498
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0498: Homolog of fucose/glucose/galactose permeases
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Homolog of fucose/glucose/galactose permeases
LAF_1741
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1741: Conserved hypothetical protein
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0499: Conserved hypothetical protein
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Conserved hypothetical protein
rbsK1
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1742: Ribokinase (EC 2.7.1.15)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0500: Ribokinase (EC 2.7.1.15)
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Ribokinase (EC 2.7.1.15)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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