Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FabR2 - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid biosynthesis
Effector: Unsaturated acyl-ACP; Unsaturated acyl-CoA
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 3 2
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp 3 2
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000
Azotobacter vinelandii AvOP
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
fabR2
*
Pseudomonas aeruginosa PAO1

Site:
position = -98
score = 5.46788
sequence = TGTAGACATCTGTATACT

Gene: PA1539: Unsaturated fatty acid biosythesis repressor FabR2, TetR family
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -66
score = 5.39152
sequence = GGTAGACATGTGTATACT

Site:
position = -86
score = 5.34893
sequence = TGTCTACATCTGTATACC

Gene: Pmen_2619: Unsaturated fatty acid biosythesis repressor FabR2, TetR family
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
 
Azotobacter vinelandii AvOP
Unsaturated fatty acid biosythesis repressor FabR2, TetR family
 
CRON 2.
COG2072
*
Pseudomonas aeruginosa PAO1

Site:
position = -33
score = 5.46788
sequence = AGTATACAGATGTCTACA

Gene: PA1538: probable flavin-containing monooxygenase, COG2072
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5

Gene: PFL_2933: probable flavin-containing monooxygenase, COG2072
*
Pseudomonas mendocina ymp

Site:
position = -68
score = 5.39152
sequence = AGTATACACATGTCTACC

Site:
position = -48
score = 5.34893
sequence = GGTATACAGATGTAGACA

Gene: Pmen_2620: probable flavin-containing monooxygenase, COG2072
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
 
Azotobacter vinelandii AvOP
probable flavin-containing monooxygenase, COG2072
COG0300
 
Pseudomonas aeruginosa PAO1

Gene: PA1537: probable short-chain dehydrogenase, COG0300
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_2621: probable short-chain dehydrogenase, COG0300
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
 
Azotobacter vinelandii AvOP
probable short-chain dehydrogenase, COG0300
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD