Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FabR2 - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid biosynthesis
Effector: Unsaturated acyl-CoA; Unsaturated acyl-ACP
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396 4 2
Marinobacter aqueolei 1 1
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297 2 2
Alcanivorax borkumensis SK2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lcfH
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
*
Reinekea sp. MED297

Site:
position = -37
score = 6.16239
sequence = AATATACATCTGTATATT

Gene: MED297_11585: putative long-chain-fatty-acid--CoA ligase
 
Alcanivorax borkumensis SK2
putative long-chain-fatty-acid--CoA ligase
 
CRON 2.
hyIII
 
Hahella chejuensis KCTC 2396

Gene: HCH_04808: COG1272: Predicted membrane protein hemolysin III homolog
 
Marinobacter aqueolei

Gene: Maqu_3135: COG1272: Predicted membrane protein hemolysin III homolog
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_3326: COG1272: Predicted membrane protein hemolysin III homolog
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0114: COG1272: Predicted membrane protein hemolysin III homolog
*
Reinekea sp. MED297

Site:
position = -43
score = 6.16239
sequence = AATATACACTTGTATATT

Gene: MED297_00660: COG1272: Predicted membrane protein hemolysin III homolog
 
Alcanivorax borkumensis SK2

Gene: ABO_2634: COG1272: Predicted membrane protein hemolysin III homolog
COG1272: Predicted membrane protein hemolysin III homolog
 
CRON 3.
COG2072
 
Hahella chejuensis KCTC 2396

Gene: HCH_04349: probable flavin-containing monooxygenase, COG2072
*
Marinobacter aqueolei

Site:
position = -80
score = 5.27258
sequence = GGTATACATGTGTCTACC

Site:
position = -104
score = 5.27258
sequence = GGTATACAGGTGTCTACT

Gene: Maqu_3819: probable flavin-containing monooxygenase, COG2072
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
probable flavin-containing monooxygenase, COG2072
 
CRON 4.
desC
*
Hahella chejuensis KCTC 2396

Site:
position = -61
score = 4.80714
sequence = TGTGAACAACTGTATATT

Gene: HCH_03838: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
desB
 
Hahella chejuensis KCTC 2396

Gene: HCH_03837: Acyl-CoA delta-9-desaturase, DesB
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Acyl-CoA delta-9-desaturase, DesB
 
CRON 5.
fabA
*
Hahella chejuensis KCTC 2396

Site:
position = -206
score = 5.1405
sequence = TCTATACATCTGTATTTT

Gene: HCH_06403: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Marinobacter aqueolei

Gene: Maqu_3147: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Marinobacter sp. ELB17

Gene: MELB17_04237: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Oceanobacter sp. RED65

Gene: RED65_09934: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Oceanospirillum sp. MED92

Gene: MED92_18318: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_4241: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Saccharophagus degradans 2-40

Gene: Sde_0999: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Teredinibacter turnerae T7901

Gene: TERTU_0948: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Cellvibrio japonicus Ueda107

Gene: CJA_0750: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0457: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Reinekea sp. MED297

Gene: MED297_01470: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Alcanivorax borkumensis SK2

Gene: ABO_0835: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
fabB
 
Hahella chejuensis KCTC 2396

Gene: HCH_06402: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Marinobacter aqueolei

Gene: Maqu_3148: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Marinobacter sp. ELB17

Gene: MELB17_04232: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Oceanobacter sp. RED65

Gene: RED65_09929: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Oceanospirillum sp. MED92

Gene: MED92_18323: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_4242: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Saccharophagus degradans 2-40

Gene: Sde_0998: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Teredinibacter turnerae T7901

Gene: TERTU_0947: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Cellvibrio japonicus Ueda107

Gene: CJA_0749: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0456: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Reinekea sp. MED297

Gene: MED297_01465: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Alcanivorax borkumensis SK2

Gene: ABO_0834: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD