Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PhnF - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Phosphonate utilization
Effector:
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfohalobium retbaense DSM 5692
Desulfomicrobium baculatum DSM 4028 15 3
Desulfovibrio desulfuricans G20 10 2
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638
Desulfovibrio vulgaris Hildenborough
Desulfovibrio vulgaris str. Miyazaki F
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
phnF
 
Desulfohalobium retbaense DSM 5692
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -79
score = 5.1981
sequence = ATTTGTATAGACATCT

Gene: Dbac_0812: Transcriptional regulator for phosphonate utilization, GntR family
*
Desulfovibrio desulfuricans G20

Site:
position = -112
score = 5.62401
sequence = GGTTGTCTAGATAACT

Gene: Dde_3327: Transcriptional regulator for phosphonate utilization, GntR family
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Transcriptional regulator for phosphonate utilization, GntR family
 
CRON 2.
phnG
 
Desulfohalobium retbaense DSM 5692
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -39
score = 5.23376
sequence = AGATGTCTATACAAAT

Gene: Dbac_0813: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
*
Desulfovibrio desulfuricans G20

Site:
position = -40
score = 5.72096
sequence = AGTTATCTAGACAACC

Gene: Dde_3328: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01262: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
phnH
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0814: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
 
Desulfovibrio desulfuricans G20

Gene: Dde_3329: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01261: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
phnI
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0815: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
 
Desulfovibrio desulfuricans G20

Gene: Dde_3330: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01260: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
phnJ
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0816: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
 
Desulfovibrio desulfuricans G20

Gene: Dde_3331: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01259: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
phnK
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0817: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
 
Desulfovibrio desulfuricans G20

Gene: Dde_3332: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01258: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
phnL
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0818: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
 
Desulfovibrio desulfuricans G20

Gene: Dde_3333: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01257: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
phnM
 
Desulfohalobium retbaense DSM 5692
 2
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0826: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase

Gene: Dbac_0819: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase
 
Desulfovibrio desulfuricans G20

Gene: Dde_3334: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01256: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase
phnN
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0820: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)
 
Desulfovibrio desulfuricans G20

Gene: Dde_3336: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01255: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)
Dbac_0821
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0821: phosphonate metabolim protein, transferase hexapeptide repeat family
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
phosphonate metabolim protein, transferase hexapeptide repeat family
rcsF
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0825: Protein RcsF involved in phosphonates utilization
 
Desulfovibrio desulfuricans G20

Gene: Dde_3335: Protein RcsF involved in phosphonates utilization
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01263: Protein RcsF involved in phosphonates utilization
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Protein RcsF involved in phosphonates utilization
phnC
 
Desulfohalobium retbaense DSM 5692
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -93
score = 5.72096
sequence = AGTTGTCTAGACCACT

Gene: Dbac_0829: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
 
Desulfovibrio desulfuricans G20

Gene: Dde_3324: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01266: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
phnD
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0828: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
 
Desulfovibrio desulfuricans G20

Gene: Dde_3325: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01265: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
phnE
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0827: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)
 
Desulfovibrio desulfuricans G20

Gene: Dde_3326: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01264: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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