Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog yybP-ykoY - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485 1 1
Chloroflexus sp. Y-400-fl 1 1
Roseiflexus castenholzii DSM 13941 1 1
Roseiflexus sp. RS-1
Herpetosiphon aurantiacus ATCC 23779 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
atcL
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_2172: Calcium-transporting ATPase (EC 3.6.3.8)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_1327: Calcium-transporting ATPase (EC 3.6.3.8)
*
Roseiflexus castenholzii DSM 13941

Site:
position = -150
score = 50.52
sequence = TAGTCGTAGATGGGG...

Gene: Rcas_0372: Calcium-transporting ATPase (EC 3.6.3.8)
 
Roseiflexus sp. RS-1
 
Herpetosiphon aurantiacus ATCC 23779
Calcium-transporting ATPase (EC 3.6.3.8)
 
CRON 2.
ykoY2
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -212
score = 68.92
sequence = ACGAACTGCATGGGG...

Gene: Haur_0016: Membrane protein TerC, possibly involved in tellurium resistance
Membrane protein TerC, possibly involved in tellurium resistance
 
CRON 3.
ykoY
*
Chloroflexus aggregans DSM 9485

Site:
position = -199
score = 45.65
sequence = AGTTCAAGAGGTTGG...

Gene: Cagg_2919: Membrane protein TerC, possibly involved in tellurium resistance
*
Chloroflexus sp. Y-400-fl

Site:
position = -190
score = 51.15
sequence = AGTGCGTAACGTTGG...

Gene: Chy400_2382: Membrane protein TerC, possibly involved in tellurium resistance
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -181
score = 53.25
sequence = TACGTTCCGTTGGGG...

Gene: Haur_1705: Membrane protein TerC, possibly involved in tellurium resistance
Membrane protein TerC, possibly involved in tellurium resistance
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD