Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog ykoK - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: ykoK
RFAM: RF00380
Regulation mode:
Biological process: Magnesium homeostasis
Effector: Magnesium ion, (Mg2+)
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 2 1
Clostridium bartlettii DSM 16795
Clostridium bolteae ATCC BAA-613
Clostridium butyricum 5521 1 1
Clostridium hiranonis DSM 13275
Clostridium leptum DSM 753
Clostridium nexile DSM 1787 1 1
Clostridium scindens ATCC 35704
Clostridium sp. L2-50
Clostridium sp. OhILAs
Clostridium kluyveri DSM 555 1 1
Clostridium difficile 630
Clostridium perfringens ATCC 13124 1 1
Clostridium novyi NT
Clostridium botulinum A str. ATCC 3502 3 2
Clostridium acetobutylicum ATCC 824 4 2
Clostridium tetani E88
Clostridium phytofermentans ISDg
Clostridium cellulolyticum H10 1 1
Clostridium sp. SS2/1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
CBY_0446
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
*
Clostridium butyricum 5521

Site:
position = -422
score = 121.67
sequence = AAAATAAATTTGTTA...

Gene: CBY_0446: hypothetical protein
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
 
CRON 2.
corA
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0110: Magnesium and cobalt transport protein CorA
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02030: Magnesium and cobalt transport protein CorA
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_06972: Magnesium and cobalt transport protein CorA
 
Clostridium butyricum 5521

Gene: CBY_2174: Magnesium and cobalt transport protein CorA
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00641: Magnesium and cobalt transport protein CorA
 
Clostridium leptum DSM 753

Gene: CLOLEP_02206: Magnesium and cobalt transport protein CorA
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50

Gene: CLOL250_01440: Magnesium and cobalt transport protein CorA
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_3798: Magnesium and cobalt transport protein CorA
 
Clostridium difficile 630

Gene: CD2122: Magnesium and cobalt transport protein CorA
 
Clostridium perfringens ATCC 13124

Gene: CPF_2767: Magnesium and cobalt transport protein CorA
 
Clostridium novyi NT

Gene: NT01CX_0767: Magnesium and cobalt transport protein CorA
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0050: Magnesium and cobalt transport protein CorA
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0294: Magnesium and cobalt transport protein CorA
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
*
Clostridium cellulolyticum H10

Site:
position = -388
score = 154.26
sequence = ACTAAATATTCGTTA...

Gene: Ccel_2001: Magnesium and cobalt transport protein CorA
 2
Clostridium sp. SS2/1

Gene: CLOSS21_00070: Magnesium and cobalt transport protein CorA

Gene: CLOSS21_00155: Magnesium and cobalt transport protein CorA
Magnesium and cobalt transport protein CorA
 
CRON 3.
CBO2870
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -231
score = 92.49
sequence = AAATAAACCTCGGTA...

Gene: CBO2870: hypothetical protein
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
mgtB
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
*
Clostridium perfringens ATCC 13124

Site:
position = -484
score = 75.01
sequence = ATATTAATCGGTAGG...

Gene: CPF_1153: Magnesium-translocating P-type ATPase (EC 3.6.3.2)
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2869: Magnesium-translocating P-type ATPase (EC 3.6.3.2)
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Magnesium-translocating P-type ATPase (EC 3.6.3.2)
 
CRON 4.
rimM
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
*
Clostridium acetobutylicum ATCC 824

Site:
position = -450
score = 137.37
sequence = AAAGTTTTAGTTAGG...

Gene: CAC0683: 16S rRNA processing protein RimM
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
16S rRNA processing protein RimM
mgtE
*2
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0576: Magnesium transporter

Site:
position = -406
score = 153.89
sequence = AAAAACTTTGTTAGG...

Gene: Cbei_3363: Magnesium transporter
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_4053: Magnesium transporter
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
*
Clostridium nexile DSM 1787

Site:
position = -354
score = 76.83
sequence = ATAAGATTCGGTAGG...

Gene: CLONEX_03217: Magnesium transporter
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01715: Magnesium transporter
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_2073: Magnesium transporter
*
Clostridium kluyveri DSM 555

Site:
position = -386
score = 148.74
sequence = ATTTTTGTTATGTTA...

Gene: CKL_3588: Magnesium transporter
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124

Gene: CPF_1530: Magnesium transporter
 
Clostridium novyi NT

Gene: NT01CX_1389: Magnesium transporter
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -368
score = 149.13
sequence = AATAATGTACGTTAG...

Gene: CBO0203: Magnesium transporter
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0684: Magnesium transporter
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Magnesium transporter
mntH
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_3364: Manganese transport protein MntH
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
*2
Clostridium acetobutylicum ATCC 824

Site:
position = -356
score = 156.28
sequence = AATAATGTATTGTTA...

Gene: CAC3329: Manganese transport protein MntH

Gene: CAC0685: Manganese transport protein MntH
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Manganese transport protein MntH
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD