Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog glmS - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: glmS
RFAM: RF00234
Regulation mode:
Biological process: Amino sugar metabolism
Effector: Glucosamine-6-phosphate
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485 1 1
Chloroflexus sp. Y-400-fl 1 1
Roseiflexus castenholzii DSM 13941 1 1
Roseiflexus sp. RS-1 1 1
Herpetosiphon aurantiacus ATCC 23779 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glmS
*
Chloroflexus aggregans DSM 9485

Site:
position = -356
score = 17.84
sequence = ACTAATAAGTCTAGC...

Gene: Cagg_3243: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Chloroflexus sp. Y-400-fl

Site:
position = -351
score = 19.42
sequence = TCTGCTTTGAAGCGC...

Gene: Chy400_0502: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Roseiflexus castenholzii DSM 13941

Site:
position = -405
score = 25.77
sequence = CCAGGCGCGCCGCCG...

Gene: Rcas_1205: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Roseiflexus sp. RS-1

Site:
position = -218
score = 14.15
sequence = AGGCGTGCTGCCGCC...

Gene: RoseRS_4064: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -292
score = 27.96
sequence = ACTCCAAGTTGGTGC...

Gene: Haur_3948: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD