Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog glmS - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: glmS
RFAM: RF00234
Regulation mode:
Biological process: Amino sugar metabolism
Effector: Glucosamine-6-phosphate
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 1 1
Clostridium bartlettii DSM 16795 1 1
Clostridium bolteae ATCC BAA-613 1 1
Clostridium butyricum 5521 1 1
Clostridium hiranonis DSM 13275 1 1
Clostridium leptum DSM 753
Clostridium nexile DSM 1787
Clostridium scindens ATCC 35704
Clostridium sp. L2-50 1 1
Clostridium sp. OhILAs 1 1
Clostridium kluyveri DSM 555 1 1
Clostridium difficile 630 1 1
Clostridium perfringens ATCC 13124 1 1
Clostridium novyi NT 1 1
Clostridium botulinum A str. ATCC 3502 1 1
Clostridium acetobutylicum ATCC 824 1 1
Clostridium tetani E88 1 1
Clostridium phytofermentans ISDg 1 1
Clostridium cellulolyticum H10 1 1
Clostridium sp. SS2/1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glmS
*
Clostridium beijerincki NCIMB 8052

Site:
position = -277
score = 85.48
sequence = GTAAATTCAACTATC...

Gene: Cbei_0246: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium bartlettii DSM 16795

Site:
position = -205
score = 90.93
sequence = TAGTGTTTATAAAGC...

Gene: CLOBAR_00755: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium bolteae ATCC BAA-613

Site:
position = -328
score = 53.26
sequence = ATAGCAAAGCTAAGC...

Gene: CLOBOL_03730: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium butyricum 5521

Site:
position = -431
score = 96.86
sequence = AAATTTTTAAAGCGC...

Gene: CBY_2954: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium hiranonis DSM 13275

Site:
position = -218
score = 97.32
sequence = TTCTGTTTTTAGCGC...

Gene: CLOHIR_00014: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
*
Clostridium sp. L2-50

Site:
position = -311
score = 44.6
sequence = TTTAGAAATCTTAGC...

Gene: CLOL250_01278: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium sp. OhILAs

Site:
position = -319
score = 107.29
sequence = AATTTAATGAAAAGC...

Gene: Clos_2836: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium kluyveri DSM 555

Site:
position = -372
score = 105.41
sequence = AAGCATAAAAAGCGC...

Gene: CKL_0317: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium difficile 630

Site:
position = -232
score = 97.41
sequence = CACCTTTCTAAGCGC...

Gene: CD0120: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium perfringens ATCC 13124

Site:
position = -302
score = 97.87
sequence = ATAATAGATTAAAGC...

Gene: CPF_2636: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium novyi NT

Site:
position = -221
score = 81.5
sequence = TTTGAGTAAGTTCGC...

Gene: NT01CX_1166: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -224
score = 58.53
sequence = GAAACTCAGATTAGC...

Gene: CBO3410: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -249
score = 123.8
sequence = TTATAGTTAAAGCGC...

Gene: CAC0158: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium tetani E88

Site:
position = -296
score = 95.68
sequence = AAAATATAATAAAGC...

Gene: CTC02543: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium phytofermentans ISDg

Site:
position = -209
score = 67.01
sequence = AGATAAAATTAGCGC...

Gene: null: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium cellulolyticum H10

Site:
position = -432
score = 82.77
sequence = GAATTAAAAAGGCGC...

Gene: Ccel_1205: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
*
Clostridium sp. SS2/1

Site:
position = -291
score = 80.25
sequence = ACAGAATTTAAGCGC...

Gene: CLOSS21_00892: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD