Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Trp) - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Trp-tRNA
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485 1 1
Chloroflexus sp. Y-400-fl 1 1
Roseiflexus castenholzii DSM 13941 1 1
Roseiflexus sp. RS-1 1 1
Herpetosiphon aurantiacus ATCC 23779 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
trpS
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_2121: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_1530: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -291
score = 107.24
sequence = AAACAACGTTGACGC...

Gene: Haur_0220: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
 
CRON 2.
trpB
*
Chloroflexus aggregans DSM 9485

Site:
position = -327
score = 77.41
sequence = ATAACCGACGTTGAT...

Gene: Cagg_2123: Tryptophan synthase beta chain like (EC 4.2.1.20)
*
Chloroflexus sp. Y-400-fl

Site:
position = -320
score = 77.56
sequence = ATAACCGACGTTGAT...

Gene: Chy400_1532: Tryptophan synthase beta chain like (EC 4.2.1.20)
*
Roseiflexus castenholzii DSM 13941

Site:
position = -396
score = 32.41
sequence = ATTAACAGCGATGAA...

Gene: Rcas_2159: Tryptophan synthase beta chain like (EC 4.2.1.20)
*
Roseiflexus sp. RS-1

Site:
position = -394
score = 57.39
sequence = GTTAACGACTGTGAA...

Gene: RoseRS_1459: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Herpetosiphon aurantiacus ATCC 23779
Tryptophan synthase beta chain like (EC 4.2.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD