Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Trp) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Trp-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 8 2
Clostridium bartlettii DSM 16795 3 3
Clostridium bolteae ATCC BAA-613 10 2
Clostridium butyricum 5521 4 3
Clostridium hiranonis DSM 13275 3 2
Clostridium leptum DSM 753 8 2
Clostridium nexile DSM 1787 7 2
Clostridium scindens ATCC 35704 3 1
Clostridium sp. L2-50 7 2
Clostridium sp. OhILAs 5 3
Clostridium kluyveri DSM 555 9 3
Clostridium difficile 630 3 2
Clostridium perfringens ATCC 13124 1 1
Clostridium novyi NT 2 2
Clostridium botulinum A str. ATCC 3502 2 2
Clostridium acetobutylicum ATCC 824 9 3
Clostridium tetani E88 1 1
Clostridium phytofermentans ISDg 2 2
Clostridium cellulolyticum H10 7 1
Clostridium sp. SS2/1 9 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
trpP
*
Clostridium beijerincki NCIMB 8052

Site:
position = -408
score = 103.69
sequence = TAAATCCTATGAAGA...

Gene: Cbei_0652: Substrate-specific component TrpP of tryptophan ECF transporter
*
Clostridium bartlettii DSM 16795

Site:
position = -462
score = 114.79
sequence = TAAATCCTTTGAAGA...

Gene: CLOBAR_01747: Substrate-specific component TrpP of tryptophan ECF transporter
 
Clostridium bolteae ATCC BAA-613
*
Clostridium butyricum 5521

Site:
position = -456
score = 92.26
sequence = ATTAAATTCCAGGAA...

Gene: CBY_3675: Substrate-specific component TrpP of tryptophan ECF transporter
*
Clostridium hiranonis DSM 13275

Site:
position = -381
score = 103.76
sequence = AGTAAATTCTTTGAC...

Gene: CLOHIR_00214: Substrate-specific component TrpP of tryptophan ECF transporter
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
*
Clostridium kluyveri DSM 555

Site:
position = -314
score = 99.58
sequence = TAAATCCTTTGACGA...

Gene: CKL_0804: Substrate-specific component TrpP of tryptophan ECF transporter
*
Clostridium difficile 630

Site:
position = -415
score = 87.45
sequence = ATTAAATCCTATGAC...

Gene: CD1988: Substrate-specific component TrpP of tryptophan ECF transporter
 
Clostridium perfringens ATCC 13124

Gene: CPF_1504: Substrate-specific component TrpP of tryptophan ECF transporter
*
Clostridium novyi NT

Site:
position = -383
score = 93.71
sequence = TAAAATCGTGGATCA...

Gene: NT01CX_0132: Substrate-specific component TrpP of tryptophan ECF transporter
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -478
score = 105.6
sequence = CTAATTCATTGATAA...

Gene: CBO2919: Substrate-specific component TrpP of tryptophan ECF transporter
*
Clostridium acetobutylicum ATCC 824

Site:
position = -382
score = 109.42
sequence = TAAATCCTTTGATAA...

Gene: CAC3617: Substrate-specific component TrpP of tryptophan ECF transporter
*
Clostridium tetani E88

Site:
position = -375
score = 109.34
sequence = GAAATTCGTTGATAA...

Gene: CTC00833: Substrate-specific component TrpP of tryptophan ECF transporter
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Substrate-specific component TrpP of tryptophan ECF transporter
 
CRON 2.
trpB2
 
Clostridium beijerincki NCIMB 8052
*
Clostridium bartlettii DSM 16795

Site:
position = -310
score = 97.87
sequence = AATCAAACCGATGAG...

Gene: CLOBAR_02812: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
*
Clostridium leptum DSM 753

Site:
position = -194
score = 100.67
sequence = AGAAACCGTGGAGCA...

Gene: CLOLEP_00758: Tryptophan synthase beta chain like (EC 4.2.1.20)
*
Clostridium nexile DSM 1787

Site:
position = -345
score = 84.61
sequence = AAATAAACCGATGAG...

Gene: CLONEX_00452: Tryptophan synthase beta chain like (EC 4.2.1.20)
 2
Clostridium scindens ATCC 35704

Gene: CLOSCI_01280: Tryptophan synthase beta chain like (EC 4.2.1.20)

Gene: CLOSCI_01281: Tryptophan synthase beta chain like (EC 4.2.1.20)
*
Clostridium sp. L2-50

Site:
position = -481
score = 72.52
sequence = TTAAACCGTTGAAGG...

Gene: CLOL250_01451: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Clostridium sp. OhILAs
*
Clostridium kluyveri DSM 555

Site:
position = -316
score = 109.98
sequence = AAATAAACTGATGAA...

Gene: CKL_3062: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
*
Clostridium phytofermentans ISDg

Site:
position = -446
score = 85.16
sequence = TTTAAAACCGTTGAC...

Gene: null: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Clostridium cellulolyticum H10

Gene: Ccel_2450: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Clostridium sp. SS2/1
Tryptophan synthase beta chain like (EC 4.2.1.20)
 
CRON 3.
mtnN
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
*
Clostridium hiranonis DSM 13275

Site:
position = -262
score = 101.36
sequence = TAAATCCTAAGACTG...

Gene: CLOHIR_01115: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
*
Clostridium difficile 630

Site:
position = -284
score = 86.84
sequence = ATTAAATCCTGAGAT...

Gene: CD2611: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)
trpS
 
Clostridium beijerincki NCIMB 8052
*
Clostridium bartlettii DSM 16795

Site:
position = -314
score = 106.22
sequence = TAAATCCATTGAGAA...

Gene: CLOBAR_00345: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium bolteae ATCC BAA-613
*
Clostridium butyricum 5521

Site:
position = -350
score = 76.52
sequence = AATAAATCCAATGAA...

Gene: CBY_3915: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01116: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium leptum DSM 753

Gene: CLOLEP_00284: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium nexile DSM 1787

Gene: CLONEX_03060: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01291: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium sp. L2-50
*
Clostridium sp. OhILAs

Site:
position = -288
score = 106.87
sequence = TGAAAAAGCAATGAT...

Gene: Clos_2123: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium kluyveri DSM 555

Gene: CKL_0610: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium difficile 630

Gene: CD2610: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
*
Clostridium perfringens ATCC 13124

Site:
position = -345
score = 119.03
sequence = AAATATCAATGACAA...

Gene: CPF_0614: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium novyi NT

Gene: NT01CX_1355: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -288
score = 97.24
sequence = TTAATATTTTAAGAA...

Gene: CBO3331: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
*
Clostridium acetobutylicum ATCC 824

Site:
position = -279
score = 95.27
sequence = TAAAATCGATGAGAA...

Gene: CAC0626: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium tetani E88

Gene: CTC02453: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
*
Clostridium phytofermentans ISDg

Site:
position = -326
score = 108.94
sequence = AGATAAACCGATGAT...

Gene: null: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium cellulolyticum H10

Gene: Ccel_1411: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
Clostridium sp. SS2/1
Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type
 
CRON 4.
trpE
*
Clostridium beijerincki NCIMB 8052

Site:
position = -193
score = 19.12
sequence = AATATAGAGTTAGAA...

Gene: Cbei_1749: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Clostridium bartlettii DSM 16795
*
Clostridium bolteae ATCC BAA-613

Site:
position = -486
score = 68.94
sequence = TAAAAAACTGTTGAG...

Gene: CLOBOL_04492: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Clostridium butyricum 5521

Site:
position = -130
score = 22.66
sequence = AAATTTGGGTGGCAC...

Gene: CBY_1065: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Clostridium hiranonis DSM 13275
*
Clostridium leptum DSM 753

Site:
position = -453
score = 88.9
sequence = ATTCAAACCGTTGAA...

Gene: CLOLEP_01664: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Clostridium nexile DSM 1787

Site:
position = -394
score = 84.26
sequence = CGTCAAACCGTTGAA...

Gene: CLONEX_03129: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Clostridium scindens ATCC 35704
*
Clostridium sp. L2-50

Site:
position = -382
score = 91.92
sequence = AAACAAACCAATGAG...

Gene: CLOL250_01008: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Clostridium sp. OhILAs
*
Clostridium kluyveri DSM 555

Site:
position = -366
score = 89.95
sequence = TAAATCCTATGAGCA...

Gene: CKL_1274: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
*
Clostridium acetobutylicum ATCC 824

Site:
position = -395
score = 100.36
sequence = ATACAAGTCTGTGAA...

Gene: CAC3163: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Clostridium cellulolyticum H10

Site:
position = -334
score = 81.96
sequence = TTAAACCGTTGATGT...

Gene: Ccel_3213: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Clostridium sp. SS2/1

Site:
position = -406
score = 73.21
sequence = GATAAATCCGATGAA...

Gene: CLOSS21_01327: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
trpG
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1750: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04491: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
 
Clostridium butyricum 5521

Gene: CBY_1064: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753

Gene: CLOLEP_01663: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
 
Clostridium nexile DSM 1787

Gene: CLONEX_03128: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50

Gene: CLOL250_01007: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_1275: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824

Gene: CAC3162: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
 
Clostridium cellulolyticum H10

Gene: Ccel_3214: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
 
Clostridium sp. SS2/1
Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb
trpD
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1751: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04490: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753

Gene: CLOLEP_01662: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03127: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50

Gene: CLOL250_01006: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_1276: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824

Gene: CAC3161: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Clostridium cellulolyticum H10

Gene: Ccel_3215: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01326: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
trpC
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1752: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04489: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 2
Clostridium leptum DSM 753

Gene: CLOLEP_01661: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)

Gene: CLOLEP_00737: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03126: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50

Gene: CLOL250_01005: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_1277: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824

Gene: CAC3160: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Clostridium cellulolyticum H10

Gene: Ccel_3216: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01325: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
trpF
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1753: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04488: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Clostridium butyricum 5521

Gene: CBY_1868: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753

Gene: CLOLEP_01660: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50

Gene: CLOL250_01072: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_1278: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824

Gene: CAC3159: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Clostridium cellulolyticum H10

Gene: Ccel_3217: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01324: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
trpB
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1754: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04487: Tryptophan synthase beta chain (EC 4.2.1.20)
 2
Clostridium butyricum 5521

Gene: CBY_0407: Tryptophan synthase beta chain (EC 4.2.1.20)

Gene: CBY_1867: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753

Gene: CLOLEP_01659: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03125: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50

Gene: CLOL250_01004: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_1279: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
*
Clostridium novyi NT

Site:
position = -375
score = 60.15
sequence = ACAAGTCATTGACTG...

Gene: NT01CX_1342: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824

Gene: CAC3158: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Clostridium cellulolyticum H10

Gene: Ccel_3218: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01323: Tryptophan synthase beta chain (EC 4.2.1.20)
Tryptophan synthase beta chain (EC 4.2.1.20)
trpA
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1755: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04486: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Clostridium butyricum 5521

Gene: CBY_0406: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753

Gene: CLOLEP_01658: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03124: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50

Gene: CLOL250_01003: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_1280: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824

Gene: CAC3157: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Clostridium tetani E88
 2
Clostridium phytofermentans ISDg

Gene: null: Tryptophan synthase alpha chain (EC 4.2.1.20)

Gene: null: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Clostridium cellulolyticum H10

Gene: Ccel_3219: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01322: Tryptophan synthase alpha chain (EC 4.2.1.20)
Tryptophan synthase alpha chain (EC 4.2.1.20)
 
CRON 5.
trpX
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00130: ABC transporter substrate-binding protein
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
*2
Clostridium sp. OhILAs

Site:
position = -346
score = 120.75
sequence = TAAAGGCGTTGACGG...

Gene: Clos_2702: ABC transporter substrate-binding protein

Site:
position = -340
score = 111.76
sequence = TAAAAGCGTTGATGA...

Gene: Clos_2705: ABC transporter substrate-binding protein
 
Clostridium kluyveri DSM 555
 2
Clostridium difficile 630

Gene: CD0876: ABC transporter substrate-binding protein

Gene: CD0873: ABC transporter substrate-binding protein
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0670: ABC transporter substrate-binding protein
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
ABC transporter substrate-binding protein
trpY
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00132: ABC transporter, permease protein
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_2703: ABC transporter, permease protein
 
Clostridium kluyveri DSM 555
 2
Clostridium difficile 630

Gene: CD0878: ABC transporter, permease protein

Gene: CD0875: ABC transporter, permease protein
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0668: ABC transporter, permease protein
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
ABC transporter, permease protein
trpZ
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00131: ABC transporter, ATP-binding protein
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_2704: ABC transporter, ATP-binding protein
 
Clostridium kluyveri DSM 555
 2
Clostridium difficile 630

Gene: CD0877: ABC transporter, ATP-binding protein

Gene: CD0874: ABC transporter, ATP-binding protein
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0669: ABC transporter, ATP-binding protein
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
ABC transporter, ATP-binding protein
 
CRON 6.
trpX
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1079: ABC transporter substrate-binding protein
 
Clostridium bartlettii DSM 16795
*
Clostridium bolteae ATCC BAA-613

Site:
position = -370
score = 107.93
sequence = TTAAACCGTAGAGAA...

Gene: CLOBOL_01967: ABC transporter substrate-binding protein
 
Clostridium butyricum 5521

Gene: CBY_2641: ABC transporter substrate-binding protein
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
*
Clostridium scindens ATCC 35704

Site:
position = -321
score = 98.85
sequence = TAAAACCGTTGAGAA...

Gene: CLOSCI_01265: ABC transporter substrate-binding protein
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_0621: ABC transporter substrate-binding protein
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1162: ABC transporter substrate-binding protein
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
*
Clostridium sp. SS2/1

Site:
position = -308
score = 117.19
sequence = AGAAACCGTTGAGAA...

Gene: CLOSS21_02587: ABC transporter substrate-binding protein
ABC transporter substrate-binding protein
trpY
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1080: ABC transporter integral membrane protein
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01968: ABC transporter integral membrane protein
 
Clostridium butyricum 5521

Gene: CBY_2640: ABC transporter integral membrane protein
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01266: ABC transporter integral membrane protein
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_0620: ABC transporter integral membrane protein
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1163: ABC transporter integral membrane protein
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1

Gene: CLOSS21_02588: ABC transporter integral membrane protein
ABC transporter integral membrane protein
trpZ
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1081: ABC transporter, ATP-binding protein
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01969: ABC transporter, ATP-binding protein
 
Clostridium butyricum 5521

Gene: CBY_2639: ABC transporter, ATP-binding protein
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01267: ABC transporter, ATP-binding protein
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_0619: ABC transporter, ATP-binding protein
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1164: ABC transporter, ATP-binding protein
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1

Gene: CLOSS21_02589: ABC transporter, ATP-binding protein
ABC transporter, ATP-binding protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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