Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Trp) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Trp-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 7 1
Pediococcus pentosaceus ATCC 25745 1 1
Lactobacillus sakei subsp. sakei 23K 1 1
Lactobacillus brevis ATCC 367 2 2
Lactobacillus casei ATCC 334 7 3
Lactobacillus plantarum WCFS1 9 3
Lactobacillus johnsonii NCC 533
Lactobacillus acidophilus NCFM
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus helveticus DPC 4571
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
trpS
 
Oenococcus oeni PSU-1

Gene: OEOE_1800: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1856: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -215
score = 63.8
sequence = TTTAAAATGAAAGTA...

Gene: PEPE_0256: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -253
score = 86.18
sequence = AAACAGAGTGAAGGA...

Gene: LSA0327: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
*
Lactobacillus brevis ATCC 367

Site:
position = -223
score = 68.04
sequence = AGACTAACGATAAAA...

Gene: LVIS_0448: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
*
Lactobacillus casei ATCC 334

Site:
position = -350
score = 72.79
sequence = TATTCACACAAACGA...

Gene: LSEI_2624: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
*
Lactobacillus plantarum WCFS1

Site:
position = -246
score = 84.75
sequence = ATTAATCGTTGAAGA...

Gene: lp_0434: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
 
Lactobacillus johnsonii NCC 533

Gene: LJ0198: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
 
Lactobacillus acidophilus NCFM

Gene: LBA0209: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0293: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -206
score = 65.5
sequence = AATCTTCGTTGAACA...

Gene: LSL_0218: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
*
Lactobacillus fermentum IFO 3956

Site:
position = -218
score = 46.47
sequence = AATCAGACCGGGAAA...

Gene: LAF_0067: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0226: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
*
Lactobacillus reuteri JCM 1112

Site:
position = -196
score = 37.18
sequence = TAAAATTAACTATAT...

Gene: LAR_0194: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
*
Lactobacillus rhamnosus GG

Site:
position = -226
score = 73.58
sequence = TATTCATACAAACGA...

Gene: LGG_02609: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2
 
CRON 2.
trpB
 
Oenococcus oeni PSU-1
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -327
score = 67.78
sequence = TCATAAACTGATGAG...

Gene: LEUM_1176: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334

Gene: LSEI_0075: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Lactobacillus plantarum WCFS1

Gene: lp_1657: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00099: Tryptophan synthase beta chain (EC 4.2.1.20)
Tryptophan synthase beta chain (EC 4.2.1.20)
trpD
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1175: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
*
Lactobacillus casei ATCC 334

Site:
position = -468
score = 97.1
sequence = GAACAAACCGATGAT...

Gene: LSEI_0078: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Lactobacillus plantarum WCFS1

Gene: lp_1654: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00102: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
trpC
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1174: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334

Gene: LSEI_0077: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Lactobacillus plantarum WCFS1

Gene: lp_1655: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00101: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
trpF
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1173: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0255: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334

Gene: LSEI_0076: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Lactobacillus plantarum WCFS1

Gene: lp_1656: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00100: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
trpA
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1172: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334

Gene: LSEI_0074: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Lactobacillus plantarum WCFS1

Gene: lp_1658: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00098: Tryptophan synthase alpha chain (EC 4.2.1.20)
Tryptophan synthase alpha chain (EC 4.2.1.20)
trpE
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1171: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
*
Lactobacillus plantarum WCFS1

Site:
position = -372
score = 77.74
sequence = TGAAACCGATGAAGT...

Gene: lp_1652: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
trpG
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1170: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1

Gene: lp_1653: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
CRON 3.
oppA
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
*
Lactobacillus brevis ATCC 367

Site:
position = -376
score = 99.66
sequence = AAACAAACCATTGAA...

Gene: LVIS_0057: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
*
Lactobacillus casei ATCC 334

Site:
position = -416
score = 89.92
sequence = ATGCAAACCTTTGAA...

Gene: LSEI_2797: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
*
Lactobacillus plantarum WCFS1

Site:
position = -396
score = 84.08
sequence = TTATAAACCAATGAG...

Gene: lp_0092: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_02801: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD