Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Thr) - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Thr-tRNA
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485
Chloroflexus sp. Y-400-fl 2 1
Roseiflexus castenholzii DSM 13941 2 1
Roseiflexus sp. RS-1 2 1
Herpetosiphon aurantiacus ATCC 23779 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Cagg_2512
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_2512: hypothetical protein
*
Chloroflexus sp. Y-400-fl

Site:
position = -288
score = 68.46
sequence = TCGCAAAGCGCTGAC...

Gene: Chy400_1309: hypothetical protein
*
Roseiflexus castenholzii DSM 13941

Site:
position = -278
score = 79.91
sequence = AGACTGTGCGTTGAC...

Gene: Rcas_0350: hypothetical protein
*
Roseiflexus sp. RS-1

Site:
position = -288
score = 80.93
sequence = TCCGTTTGCGTTGAC...

Gene: RoseRS_0111: hypothetical protein
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -287
score = 58.54
sequence = TAACCCAACTGTGAT...

Gene: Haur_2852: hypothetical protein
hypothetical protein
Haur_2851
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2851: hypothetical protein
hypothetical protein
thrS
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_2511: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_1308: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_0349: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Roseiflexus sp. RS-1

Gene: RoseRS_0110: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2850: Threonyl-tRNA synthetase (EC 6.1.1.3)
Threonyl-tRNA synthetase (EC 6.1.1.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD