Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ser) - Streptococcaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ser-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Streptococcus pneumoniae TIGR4 1 1
Streptococcus equi subsp. zooepidemicus MGCS10565 1 1
Streptococcus gordonii str. Challis substr. CH1 1 1
Streptococcus thermophilus CNRZ1066 1 1
Streptococcus mutans UA159 1 1
Streptococcus pyogenes M1 GAS 1 1
Streptococcus sanguinis SK36 1 1
Streptococcus agalactiae 2603V/R 1 1
Streptococcus uberis 0140J 1 1
Lactococcus lactis subsp. cremoris SK11 1 1
Lactococcus lactis subsp. lactis Il1403 1 1
Streptococcus suis 05ZYH33 1 1
Streptococcus dysgalactiae subsp. equisimilis GGS_124 1 1
Streptococcus gallolyticus UCN34 1 1
Streptococcus mitis B6 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
serS
*
Streptococcus pneumoniae TIGR4

Site:
position = -205
score = 59.39
sequence = AGTATAATCATAGCA...

Gene: SP_0411: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus equi subsp. zooepidemicus MGCS10565

Site:
position = -278
score = 69.24
sequence = TATAATAGGTCTAGC...

Gene: Sez_0418: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus gordonii str. Challis substr. CH1

Site:
position = -202
score = 73.19
sequence = TATAATCTAGGAAAC...

Gene: SGO_1683: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus thermophilus CNRZ1066

Site:
position = -198
score = 63.23
sequence = ATGTAAAGGACGGAT...

Gene: str0329: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus mutans UA159

Site:
position = -377
score = 68.81
sequence = TAAGAACAACGGATA...

Gene: SMU.1886: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus pyogenes M1 GAS

Site:
position = -274
score = 66.97
sequence = TAATAGTCCTAACGG...

Gene: SPy1742: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus sanguinis SK36

Site:
position = -202
score = 78.79
sequence = TATAATAGTCGAAAC...

Gene: SSA_1925: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus agalactiae 2603V/R

Site:
position = -215
score = 75.11
sequence = TATAATAACCTTAAC...

Gene: SAG0356: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus uberis 0140J

Site:
position = -207
score = 69.32
sequence = TAACATATCGGATAA...

Gene: SUB1489: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactococcus lactis subsp. cremoris SK11

Site:
position = -337
score = 83.88
sequence = TAAAATAATTTTAGA...

Gene: LACR_1870: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactococcus lactis subsp. lactis Il1403

Site:
position = -326
score = 74.49
sequence = TAAAATAAATCTAGA...

Gene: L150515: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus suis 05ZYH33

Site:
position = -79
score = 77.66
sequence = TATAATAGTAGAAAC...

Gene: SSU05_1782: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus dysgalactiae subsp. equisimilis GGS_124

Site:
position = -272
score = 75.44
sequence = ATAGTGCTAACGGAT...

Gene: SDEG_1811: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus gallolyticus UCN34

Site:
position = -240
score = 67.56
sequence = ATAAAGAGTACGGAT...

Gene: GALLO_0346: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Streptococcus mitis B6

Site:
position = -204
score = 60.2
sequence = TATAATCATAGCAAC...

Gene: smi_1689: Seryl-tRNA synthetase (EC 6.1.1.11)
Seryl-tRNA synthetase (EC 6.1.1.11)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD