Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Pro) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Pro-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 1 1
Clostridium difficile 630 2 1
Clostridium perfringens ATCC 13124 1 1
Clostridium novyi NT 1 1
Clostridium botulinum A str. ATCC 3502 1 1
Clostridium acetobutylicum ATCC 824 1 1
Clostridium tetani E88 1 1
Clostridium phytofermentans ISDg 1 1
Clostridium cellulolyticum H10
Clostridium kluyveri DSM 555 1 1
Clostridium sp. OhILAs 1 1
Clostridium bartlettii DSM 16795 1 1
Clostridium bolteae ATCC BAA-613 1 1
Clostridium butyricum 5521 1 1
Clostridium hiranonis DSM 13275 2 1
Clostridium leptum DSM 753
Clostridium nexile DSM 1787 1 1
Clostridium scindens ATCC 35704 1 1
Clostridium sp. L2-50
Clostridium sp. SS2/1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
proS2
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630

Gene: CD0050: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
 
Clostridium perfringens ATCC 13124
*
Clostridium novyi NT

Site:
position = -300
score = 113.1
sequence = TTATGACTAAGATAA...

Gene: NT01CX_0337: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -270
score = 117.45
sequence = TTTTATAGCAAAGAA...

Gene: CBO3344: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
*
Clostridium phytofermentans ISDg

Site:
position = -344
score = 110.28
sequence = GAAAGTTGCGATGAA...

Gene: null: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
 
Clostridium cellulolyticum H10

Gene: Ccel_0345: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
*
Clostridium kluyveri DSM 555

Site:
position = -285
score = 115.02
sequence = AAAATGCAAAGAAGG...

Gene: CKL_0602: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
*
Clostridium sp. OhILAs

Site:
position = -267
score = 114.18
sequence = ATAAATCTATGATGG...

Gene: Clos_0465: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
 
Clostridium bartlettii DSM 16795
*
Clostridium bolteae ATCC BAA-613

Site:
position = -309
score = 95.68
sequence = AGATATGACATGGAA...

Gene: CLOBOL_06453: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
 
Clostridium butyricum 5521
*
Clostridium hiranonis DSM 13275

Site:
position = -290
score = 119.93
sequence = TGATTGCAATGATAA...

Gene: CLOHIR_01549: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
 
Clostridium leptum DSM 753

Gene: CLOLEP_03755: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
*
Clostridium nexile DSM 1787

Site:
position = -297
score = 107.31
sequence = AATATTGGCTGTGAA...

Gene: CLONEX_03542: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
*
Clostridium scindens ATCC 35704

Site:
position = -311
score = 104.69
sequence = ATTTGGCAATGAAGA...

Gene: CLOSCI_01983: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
 
Clostridium sp. L2-50

Gene: CLOL250_02969: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
 
Clostridium sp. SS2/1

Gene: CLOSS21_00467: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type
proS
*
Clostridium beijerincki NCIMB 8052

Site:
position = -326
score = 80.76
sequence = GTAAAACGTTGATGA...

Gene: Cbei_0130: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type
*
Clostridium difficile 630

Site:
position = -271
score = 127.91
sequence = AATTAGCTATGATAA...

Gene: CD0049: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type
*
Clostridium perfringens ATCC 13124

Site:
position = -273
score = 83.09
sequence = TGTAAAGACTGTGAA...

Gene: CPF_2738: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
*
Clostridium acetobutylicum ATCC 824

Site:
position = -206
score = 71.07
sequence = TAGTAAAACTGTGAT...

Gene: CAC3178: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type
*
Clostridium tetani E88

Site:
position = -250
score = 73.64
sequence = TAAAGTGACTATGAT...

Gene: CTC02625: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
*
Clostridium bartlettii DSM 16795

Site:
position = -278
score = 122.92
sequence = CAAAAGCAACGATTA...

Gene: CLOBAR_00190: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type
 
Clostridium bolteae ATCC BAA-613
*
Clostridium butyricum 5521

Site:
position = -394
score = 87.7
sequence = TTTTAGAGCAATGAT...

Gene: CBY_2151: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01550: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD