Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Leu) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Leu-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 1 1
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus acidophilus NCFM 1 1
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus plantarum WCFS1 1 1
Lactobacillus casei ATCC 334 1 1
Lactobacillus brevis ATCC 367 2 2
Lactobacillus sakei subsp. sakei 23K 1 1
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
leuS
*
Oenococcus oeni PSU-1

Site:
position = -158
score = 77.38
sequence = ACACAATTAGTAGTA...

Gene: OEOE_0839: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus reuteri JCM 1112

Site:
position = -270
score = 104.24
sequence = TAAATATTTGATCGT...

Gene: LAR_1228: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus helveticus DPC 4571

Site:
position = -227
score = 88.85
sequence = AATAAAGGTCAGGAA...

Gene: lhv_1726: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus fermentum IFO 3956

Site:
position = -275
score = 99.3
sequence = AATATCAGACCGGAA...

Gene: LAF_1354: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -279
score = 123.76
sequence = TATGAACGTAGATAA...

Gene: LSL_0442: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -239
score = 90.36
sequence = ATAAAGGGCAGGGAC...

Gene: LBUL_1451: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus acidophilus NCFM

Site:
position = -228
score = 88.21
sequence = AATAAAGGTCAGGAA...

Gene: LBA1617: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus johnsonii NCC 533

Site:
position = -240
score = 85.95
sequence = AAAAATAAAGGCTAG...

Gene: LJ0680: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus plantarum WCFS1

Site:
position = -348
score = 96.63
sequence = TTACGACTCTGAGAA...

Gene: lp_1316: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus casei ATCC 334

Site:
position = -238
score = 81.69
sequence = AACGAACAAAGGAGT...

Gene: LSEI_0883: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus brevis ATCC 367

Site:
position = -271
score = 89.43
sequence = GATCTAAACGTTGAC...

Gene: LVIS_1062: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -311
score = 118.25
sequence = TTATTTAACGTTGAG...

Gene: LSA1436: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -265
score = 104.35
sequence = AAATATTGTCGATAA...

Gene: PEPE_0645: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -298
score = 87.63
sequence = TAGCATTATTGTTCA...

Gene: LEUM_0635: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Lactobacillus rhamnosus GG

Site:
position = -239
score = 92.26
sequence = AACGAACAAAGGAGT...

Gene: LGG_00848: Leucyl-tRNA synthetase (EC 6.1.1.4)
Leucyl-tRNA synthetase (EC 6.1.1.4)
 
CRON 2.
oppA
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
*
Lactobacillus brevis ATCC 367

Site:
position = -347
score = 79.73
sequence = CTTAAAAGTGATGAC...

Gene: LVIS_0014: ABC-type oligopeptide transport system, periplasmic component
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
ABC-type oligopeptide transport system, periplasmic component
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD