Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Gly) - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Gly-tRNA
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485 1 1
Chloroflexus sp. Y-400-fl 1 1
Roseiflexus castenholzii DSM 13941 1 1
Roseiflexus sp. RS-1 1 1
Herpetosiphon aurantiacus ATCC 23779 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glyS
*
Chloroflexus aggregans DSM 9485

Site:
position = -215
score = 28.41
sequence = CGATGAACCGGAGGA...

Gene: Cagg_1451: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Chloroflexus sp. Y-400-fl

Site:
position = -227
score = 24.56
sequence = CATCGGCGATGATCC...

Gene: Chy400_2682: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Roseiflexus castenholzii DSM 13941

Site:
position = -236
score = 37.29
sequence = GAACGCGGCGTGGAA...

Gene: Rcas_0046: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Roseiflexus sp. RS-1

Site:
position = -241
score = 57.25
sequence = ACGTGTGGCGTTGAA...

Gene: RoseRS_0862: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -346
score = 86.75
sequence = TCTTGGTGATGAACC...

Gene: Haur_4697: Glycyl-tRNA synthetase (EC 6.1.1.14)
Glycyl-tRNA synthetase (EC 6.1.1.14)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD