Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Gly) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Gly-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 1 1
Clostridium difficile 630
Clostridium perfringens ATCC 13124 1 1
Clostridium novyi NT 1 1
Clostridium botulinum A str. ATCC 3502 1 1
Clostridium acetobutylicum ATCC 824 1 1
Clostridium tetani E88 1 1
Clostridium phytofermentans ISDg 1 1
Clostridium cellulolyticum H10
Clostridium kluyveri DSM 555 1 1
Clostridium sp. OhILAs 1 1
Clostridium bartlettii DSM 16795
Clostridium bolteae ATCC BAA-613
Clostridium butyricum 5521 1 1
Clostridium hiranonis DSM 13275
Clostridium leptum DSM 753
Clostridium nexile DSM 1787
Clostridium scindens ATCC 35704
Clostridium sp. L2-50
Clostridium sp. SS2/1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glyS
*
Clostridium beijerincki NCIMB 8052

Site:
position = -223
score = 86.75
sequence = TACACATGTTGAAAA...

Gene: Cbei_0106: Glycyl-tRNA synthetase (EC 6.1.1.14)
 
Clostridium difficile 630
*
Clostridium perfringens ATCC 13124

Site:
position = -339
score = 91.18
sequence = AATATGTACTATGAT...

Gene: CPF_2779: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Clostridium novyi NT

Site:
position = -223
score = 92.18
sequence = AAAACACAATGACAA...

Gene: NT01CX_1048: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -220
score = 92.47
sequence = ATAATATACGATGAT...

Gene: CBO3517: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -217
score = 73.25
sequence = TATCTATACAATGAC...

Gene: CAC3195: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Clostridium tetani E88

Site:
position = -223
score = 80.98
sequence = ATACCACGATGATAG...

Gene: CTC00212: Glycyl-tRNA synthetase (EC 6.1.1.14)
*2
Clostridium phytofermentans ISDg

Gene: null: Glycyl-tRNA synthetase (EC 6.1.1.14)

Site:
position = -394
score = 104.03
sequence = AAACAGCGTTGATAA...

Gene: null: Glycyl-tRNA synthetase (EC 6.1.1.14)
 
Clostridium cellulolyticum H10

Gene: Ccel_1789: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Clostridium kluyveri DSM 555

Site:
position = -239
score = 73.51
sequence = AGGTTGCTTTGATAA...

Gene: CKL_0180: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Clostridium sp. OhILAs

Site:
position = -385
score = 74.64
sequence = ATATTGCTATGATGA...

Gene: Clos_1255: Glycyl-tRNA synthetase (EC 6.1.1.14)
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_05766: Glycyl-tRNA synthetase (EC 6.1.1.14)
*
Clostridium butyricum 5521

Site:
position = -216
score = 80.78
sequence = AAAATGCATGTTGAT...

Gene: CBY_2185: Glycyl-tRNA synthetase (EC 6.1.1.14)
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753

Gene: CLOLEP_00119: Glycyl-tRNA synthetase (EC 6.1.1.14)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03650: Glycyl-tRNA synthetase (EC 6.1.1.14)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01575: Glycyl-tRNA synthetase (EC 6.1.1.14)
 
Clostridium sp. L2-50

Gene: CLOL250_02737: Glycyl-tRNA synthetase (EC 6.1.1.14)
 
Clostridium sp. SS2/1

Gene: CLOSS21_02219: Glycyl-tRNA synthetase (EC 6.1.1.14)
Glycyl-tRNA synthetase (EC 6.1.1.14)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD