Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Regulog T-box(Asp) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Asp-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052
Clostridium difficile 630
Clostridium perfringens ATCC 13124
Clostridium novyi NT
Clostridium botulinum A str. ATCC 3502 1 1
Clostridium acetobutylicum ATCC 824 1 1
Clostridium tetani E88
Clostridium phytofermentans ISDg
Clostridium cellulolyticum H10 2 1
Clostridium kluyveri DSM 555
Clostridium sp. OhILAs 2 1
Clostridium bartlettii DSM 16795
Clostridium bolteae ATCC BAA-613
Clostridium butyricum 5521
Clostridium hiranonis DSM 13275
Clostridium leptum DSM 753
Clostridium nexile DSM 1787
Clostridium scindens ATCC 35704
Clostridium sp. L2-50
Clostridium sp. SS2/1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
aspS3
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -387
score = 110.26
sequence = ATTAAAATCTTTGAT...

Gene: CBO1019: Aspartyl-tRNA synthetase (EC 6.1.1.12)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -331
score = 107.06
sequence = TATAGATGCGAAGAA...

Gene: CAC3564: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
CRON 2.
hisS
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
*
Clostridium cellulolyticum H10

Site:
position = -346
score = 78.71
sequence = GGAAGTAGCCTTAAA...

Gene: Ccel_1947: Histidyl-tRNA synthetase (EC 6.1.1.21)
 
Clostridium kluyveri DSM 555
*
Clostridium sp. OhILAs

Site:
position = -283
score = 123.73
sequence = ATGGAATGCGATGAT...

Gene: Clos_1710: Histidyl-tRNA synthetase (EC 6.1.1.21)
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Histidyl-tRNA synthetase (EC 6.1.1.21)
aspS
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10

Gene: Ccel_1946: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs

Gene: Clos_1709: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Aspartyl-tRNA synthetase (EC 6.1.1.12)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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