Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Lysine - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: Lysine
RFAM: RF00168
Regulation mode:
Biological process: Lysine biosynthesis
Effector: Lysine
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 2 2
Clostridium difficile 630 8 4
Clostridium perfringens ATCC 13124 3 3
Clostridium novyi NT 3 3
Clostridium botulinum A str. ATCC 3502 4 3
Clostridium acetobutylicum ATCC 824 1 1
Clostridium tetani E88 2 2
Clostridium phytofermentans ISDg 3 2
Clostridium cellulolyticum H10 3 1
Clostridium kluyveri DSM 555 3 2
Clostridium sp. OhILAs 4 2
Clostridium bartlettii DSM 16795 7 3
Clostridium bolteae ATCC BAA-613 3 2
Clostridium butyricum 5521 1 1
Clostridium hiranonis DSM 13275 7 3
Clostridium leptum DSM 753 4 1
Clostridium nexile DSM 1787 1 1
Clostridium scindens ATCC 35704 1 1
Clostridium sp. L2-50 2 1
Clostridium sp. SS2/1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lysC
 
Clostridium beijerincki NCIMB 8052
*
Clostridium difficile 630

Site:
position = -251
score = 100.49
sequence = AGCCTAGGGTAGAGG...

Gene: CD2054: Aspartokinase (EC 2.7.2.4)
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -332
score = 94.98
sequence = CTACTTATGGAGAGG...

Gene: CBO3337: Aspartokinase (EC 2.7.2.4)
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Aspartokinase (EC 2.7.2.4)
 
Clostridium cellulolyticum H10
*
Clostridium kluyveri DSM 555

Site:
position = -401
score = 97.22
sequence = CCTAGGGTAGAGGTG...

Gene: CKL_0607: Aspartokinase (EC 2.7.2.4)
 
Clostridium sp. OhILAs
*
Clostridium bartlettii DSM 16795

Site:
position = -243
score = 86.18
sequence = AACCTAGGGTAGAGG...

Gene: CLOBAR_01961: Aspartokinase (EC 2.7.2.4)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02433: Aspartokinase (EC 2.7.2.4)
 
Clostridium butyricum 5521
*
Clostridium hiranonis DSM 13275

Site:
position = -300
score = 81.7
sequence = ACCAAGGTAGAGGCG...

Gene: CLOHIR_01388: Aspartokinase (EC 2.7.2.4)
 
Clostridium leptum DSM 753

Gene: CLOLEP_02735: Aspartokinase (EC 2.7.2.4)
 
Clostridium nexile DSM 1787

Gene: CLONEX_02746: Aspartokinase (EC 2.7.2.4)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_03696: Aspartokinase (EC 2.7.2.4)
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1

Gene: CLOSS21_02234: Aspartokinase (EC 2.7.2.4)
Aspartokinase (EC 2.7.2.4)
lysA
*
Clostridium beijerincki NCIMB 8052

Site:
position = -487
score = 86.1
sequence = GACCTGGGGTAGAGG...

Gene: Cbei_4787: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Clostridium difficile 630

Gene: CD2053: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Clostridium perfringens ATCC 13124

Site:
position = -302
score = 97.52
sequence = ACCAAAGTAGAGGTG...

Gene: CPF_0576: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Clostridium novyi NT

Site:
position = -319
score = 100.31
sequence = CCTAAGGTAGAGGTG...

Gene: NT01CX_1352: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3336: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -279
score = 94.26
sequence = CCTTTTGTAGAGGTG...

Gene: CAC0608: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Clostridium tetani E88

Site:
position = -247
score = 93.78
sequence = TACCCAGGGTAGAGG...

Gene: CTC02456: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10

Gene: Ccel_2534: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Clostridium kluyveri DSM 555

Gene: CKL_0608: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01960: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01389: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Clostridium leptum DSM 753

Gene: CLOLEP_02380: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Diaminopimelate decarboxylase (EC 4.1.1.20)
 
CRON 2.
asd
 2
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1797: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)

Gene: Cbei_0518: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Clostridium difficile 630

Site:
position = -346
score = 99.85
sequence = CCTAGGGTAGAGGTA...

Gene: CD3224: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium perfringens ATCC 13124

Gene: CPF_2160: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium novyi NT

Gene: NT01CX_1747: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3151: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 2
Clostridium acetobutylicum ATCC 824

Gene: CAC0022: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)

Gene: CAC0568: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium tetani E88

Gene: CTC02293: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium phytofermentans ISDg

Gene: null: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium cellulolyticum H10

Gene: Ccel_2591: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium kluyveri DSM 555

Gene: CKL_3207: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium sp. OhILAs

Gene: Clos_1162: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Clostridium bartlettii DSM 16795

Site:
position = -341
score = 99.29
sequence = TAACCTAAGTAGAGG...

Gene: CLOBAR_00365: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02970: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium butyricum 5521

Gene: CBY_1203: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Clostridium hiranonis DSM 13275

Site:
position = -393
score = 88.93
sequence = TAACCTGCGTAGAGG...

Gene: CLOHIR_00818: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Clostridium leptum DSM 753

Site:
position = -320
score = 104.92
sequence = CCTAAGATAGAGGTG...

Gene: CLOLEP_03139: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03027: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01339: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium sp. L2-50

Gene: CLOL250_02800: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01903: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
dapA
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1796: Dihydrodipicolinate synthase (EC 4.2.1.52)
 2
Clostridium difficile 630

Gene: CD3223: Dihydrodipicolinate synthase (EC 4.2.1.52)

Gene: CD3225: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium perfringens ATCC 13124

Gene: CPF_2161: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium novyi NT

Gene: NT01CX_1746: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3152: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2378: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium tetani E88

Gene: CTC02294: Dihydrodipicolinate synthase (EC 4.2.1.52)
*
Clostridium phytofermentans ISDg

Site:
position = -298
score = 108.23
sequence = AACAATTGGTAGAGG...

Gene: null: Dihydrodipicolinate synthase (EC 4.2.1.52)
*
Clostridium cellulolyticum H10

Site:
position = -277
score = 112.12
sequence = TATGTAAGATAGAGG...

Gene: Ccel_0526: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium kluyveri DSM 555

Gene: CKL_3206: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium sp. OhILAs

Gene: Clos_1163: Dihydrodipicolinate synthase (EC 4.2.1.52)
 2
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02458: Dihydrodipicolinate synthase (EC 4.2.1.52)

Gene: CLOBAR_00364: Dihydrodipicolinate synthase (EC 4.2.1.52)
*
Clostridium bolteae ATCC BAA-613

Site:
position = -328
score = 98.04
sequence = ATCATAGAGTAGAGG...

Gene: CLOBOL_04168: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium butyricum 5521

Gene: CBY_0567: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00817: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium leptum DSM 753

Gene: CLOLEP_03140: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium nexile DSM 1787

Gene: CLONEX_02736: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_03684: Dihydrodipicolinate synthase (EC 4.2.1.52)
*
Clostridium sp. L2-50

Site:
position = -227
score = 104.67
sequence = AATTCAGTAGAGGCG...

Gene: CLOL250_00644: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Clostridium sp. SS2/1

Gene: CLOSS21_00345: Dihydrodipicolinate synthase (EC 4.2.1.52)
Dihydrodipicolinate synthase (EC 4.2.1.52)
dapB
 2
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1795: Dihydrodipicolinate reductase (EC 1.3.1.26)

Gene: Cbei_2934: Dihydrodipicolinate reductase (EC 1.3.1.26)
 2
Clostridium difficile 630

Gene: CD3226: Dihydrodipicolinate reductase (EC 1.3.1.26)

Gene: CD3229: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium perfringens ATCC 13124

Gene: CPF_2162: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium novyi NT

Gene: NT01CX_1745: Dihydrodipicolinate reductase (EC 1.3.1.26)
 2
Clostridium botulinum A str. ATCC 3502

Gene: CBO3153: Dihydrodipicolinate reductase (EC 1.3.1.26)

Gene: CBO0791: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2379: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium tetani E88

Gene: CTC02295: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium phytofermentans ISDg

Gene: null: Dihydrodipicolinate reductase (EC 1.3.1.26)
 2
Clostridium cellulolyticum H10

Gene: Ccel_0519: Dihydrodipicolinate reductase (EC 1.3.1.26)

Gene: Ccel_0525: Dihydrodipicolinate reductase (EC 1.3.1.26)
 2
Clostridium kluyveri DSM 555

Gene: CKL_3205: Dihydrodipicolinate reductase (EC 1.3.1.26)

Gene: CKL_2799: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium sp. OhILAs

Gene: Clos_1164: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00363: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04167: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium butyricum 5521

Gene: CBY_0568: Dihydrodipicolinate reductase (EC 1.3.1.26)
 2
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00816: Dihydrodipicolinate reductase (EC 1.3.1.26)

Gene: CLOHIR_00814: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium leptum DSM 753

Gene: CLOLEP_03141: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium nexile DSM 1787

Gene: CLONEX_02737: Dihydrodipicolinate reductase (EC 1.3.1.26)
 2
Clostridium scindens ATCC 35704

Gene: CLOSCI_03685: Dihydrodipicolinate reductase (EC 1.3.1.26)

Gene: CLOSCI_00327: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium sp. L2-50

Gene: CLOL250_00645: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Clostridium sp. SS2/1

Gene: CLOSS21_00346: Dihydrodipicolinate reductase (EC 1.3.1.26)
Dihydrodipicolinate reductase (EC 1.3.1.26)
dapD
 2
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4881: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)

Gene: Cbei_1791: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium difficile 630

Gene: CD3227: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium perfringens ATCC 13124

Gene: CPF_2165: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium novyi NT

Gene: NT01CX_1738: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3156: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2381: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555

Gene: CKL_3211: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00362: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_1863: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00815: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787

Gene: CLONEX_00178: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
lysC2
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10

Gene: Ccel_0524: Aspartokinase II ( EC:2.7.2.4 )
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753

Gene: CLOLEP_03142: Aspartokinase II ( EC:2.7.2.4 )
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Aspartokinase II ( EC:2.7.2.4 )
 
CRON 3.
Clos_0722
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
*
Clostridium sp. OhILAs

Site:
position = -333
score = 108.64
sequence = GGTGGGGTAGAGGCG...

Gene: Clos_0722: Amino acid ABC transporter, amino acid-binding protein
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00196: Amino acid ABC transporter, amino acid-binding protein
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Amino acid ABC transporter, amino acid-binding protein
Clos_0723
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs

Gene: Clos_0723: Amino acid ABC transporter, permease protein
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00197: Amino acid ABC transporter, permease protein
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Amino acid ABC transporter, permease protein
Clos_0724
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs

Gene: Clos_0724: Amino acid ABC transporter, ATP-binding protein
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00198: Amino acid ABC transporter, ATP-binding protein
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Amino acid ABC transporter, ATP-binding protein
 
CRON 4.
lysP
*
Clostridium beijerincki NCIMB 8052

Site:
position = -327
score = 123.83
sequence = TAACTAAGATAGAGG...

Gene: Cbei_0788: Lysine-specific permease
 
Clostridium difficile 630
*
Clostridium perfringens ATCC 13124

Site:
position = -301
score = 117.81
sequence = TAACTGAGATAGAGG...

Gene: CPF_1369: Lysine-specific permease
*
Clostridium novyi NT

Site:
position = -340
score = 110.52
sequence = TAACTAAGATAGAGG...

Gene: NT01CX_2354: Lysine-specific permease
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -305
score = 112.44
sequence = ACTGAGGTAGAGGTG...

Gene: CBO0250: Lysine-specific permease
 2
Clostridium acetobutylicum ATCC 824

Gene: CAC3164: Lysine-specific permease

Gene: CAC3347: Lysine-specific permease
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
*
Clostridium kluyveri DSM 555

Site:
position = -295
score = 105.95
sequence = TTTAAGATAGAGGTG...

Gene: CKL_1545: Lysine-specific permease
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Lysine-specific permease
 
CRON 5.
yvsH
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
*
Clostridium sp. OhILAs

Site:
position = -365
score = 106.87
sequence = CGGGTGGGGTAGAGG...

Gene: Clos_0865: Amino acid permease
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00048: Amino acid permease
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Amino acid permease
 
CRON 6.
COG1288
 
Clostridium beijerincki NCIMB 8052
*
Clostridium difficile 630

Site:
position = -309
score = 111.91
sequence = AGATTGAGGTAGAGG...

Gene: CD3100: C4-dicarboxylate anaerobic carrier-like
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
C4-dicarboxylate anaerobic carrier-like
 
CRON 7.
alsT
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
*
Clostridium bolteae ATCC BAA-613

Site:
position = -338
score = 79.92
sequence = AGGATGCGATAGAGG...

Gene: CLOBOL_04690: Na+/alanine symporter family transporter
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Na+/alanine symporter family transporter
 
CRON 8.
lysW
 
Clostridium beijerincki NCIMB 8052
*
Clostridium difficile 630

Site:
position = -319
score = 101.75
sequence = AGAAGGGTAGAGGCG...

Gene: CD1655: Predicted lysine transporter, NhaC family
*
Clostridium perfringens ATCC 13124

Site:
position = -335
score = 110.57
sequence = AAAAAGAGGTAGAGG...

Gene: CPF_2850: Predicted lysine transporter, NhaC family
*
Clostridium novyi NT

Site:
position = -307
score = 116.36
sequence = GTTTAGTGATAGAGG...

Gene: NT01CX_0133: Predicted lysine transporter, NhaC family
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -334
score = 123.03
sequence = AAGTAGATAGAGGTG...

Gene: CBO0421: Predicted lysine transporter, NhaC family
 
Clostridium acetobutylicum ATCC 824
*
Clostridium tetani E88

Site:
position = -318
score = 106.39
sequence = AGAAAGGTAGAGGCG...

Gene: CTC00567: Predicted lysine transporter, NhaC family
*
Clostridium phytofermentans ISDg

Site:
position = -312
score = 100.12
sequence = ACATTGATAGAGGTG...

Gene: null: Predicted lysine transporter, NhaC family
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
*
Clostridium bartlettii DSM 16795

Site:
position = -263
score = 97.44
sequence = AGTAAGGTAGAGGTG...

Gene: CLOBAR_01794: Predicted lysine transporter, NhaC family
 
Clostridium bolteae ATCC BAA-613
*
Clostridium butyricum 5521

Site:
position = -425
score = 117.54
sequence = CGAAAGAGGTAGAGG...

Gene: CBY_2257: Predicted lysine transporter, NhaC family
*
Clostridium hiranonis DSM 13275

Site:
position = -275
score = 94.34
sequence = TAAATGATAGAGGCG...

Gene: CLOHIR_01339: Predicted lysine transporter, NhaC family
 
Clostridium leptum DSM 753

Gene: CLOLEP_01079: Predicted lysine transporter, NhaC family
*
Clostridium nexile DSM 1787

Site:
position = -368
score = 108.1
sequence = CTAAAAGGATAGAGG...

Gene: CLONEX_03655: Predicted lysine transporter, NhaC family
*
Clostridium scindens ATCC 35704

Site:
position = -204
score = 78.15
sequence = TGGACTTGATAGAGG...

Gene: CLOSCI_01581: Predicted lysine transporter, NhaC family
 
Clostridium sp. L2-50

Gene: CLOL250_01927: Predicted lysine transporter, NhaC family
 
Clostridium sp. SS2/1

Gene: CLOSS21_01929: Predicted lysine transporter, NhaC family
Predicted lysine transporter, NhaC family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD