Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L21_leader - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: L21_leader
RFAM: RF00559
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052
Clostridium difficile 630 3 1
Clostridium perfringens ATCC 13124 3 1
Clostridium novyi NT 3 1
Clostridium botulinum A str. ATCC 3502 3 1
Clostridium acetobutylicum ATCC 824 3 1
Clostridium tetani E88 3 1
Clostridium phytofermentans ISDg
Clostridium cellulolyticum H10
Clostridium kluyveri DSM 555 3 1
Clostridium sp. OhILAs 3 1
Clostridium bartlettii DSM 16795 3 1
Clostridium bolteae ATCC BAA-613
Clostridium butyricum 5521 3 1
Clostridium hiranonis DSM 13275 3 1
Clostridium leptum DSM 753 3 1
Clostridium nexile DSM 1787 3 1
Clostridium scindens ATCC 35704 3 1
Clostridium sp. L2-50 3 1
Clostridium sp. SS2/1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplU
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0508: LSU ribosomal protein L21p
*
Clostridium difficile 630

Site:
position = -87
score = 32.99
sequence = AATAATTGTAATGCC...

Gene: CD1161: LSU ribosomal protein L21p
*
Clostridium perfringens ATCC 13124

Site:
position = -89
score = 27.02
sequence = GGCTTTTGTAAACCG...

Gene: CPF_2385: LSU ribosomal protein L21p
*
Clostridium novyi NT

Site:
position = -89
score = 22.54
sequence = GGCATTTGTAAACCG...

Gene: NT01CX_0081: LSU ribosomal protein L21p
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -85
score = 31.97
sequence = GGCTTTTGTAGACCG...

Gene: CBO2989: LSU ribosomal protein L21p
*
Clostridium acetobutylicum ATCC 824

Site:
position = -90
score = 28.79
sequence = CACATGTAGACCGCA...

Gene: CAC1257: LSU ribosomal protein L21p
*
Clostridium tetani E88

Site:
position = -87
score = 35.12
sequence = ATGGCATTTGTAAGC...

Gene: CTC02060: LSU ribosomal protein L21p
 
Clostridium phytofermentans ISDg

Gene: null: LSU ribosomal protein L21p
 
Clostridium cellulolyticum H10

Gene: Ccel_1320: LSU ribosomal protein L21p
*
Clostridium kluyveri DSM 555

Site:
position = -95
score = 26.79
sequence = GACAGCTGTAGACCG...

Gene: CKL_0879: LSU ribosomal protein L21p
*
Clostridium sp. OhILAs

Site:
position = -81
score = 17.65
sequence = TATCTGTAGGTAGCC...

Gene: Clos_1753: LSU ribosomal protein L21p
*
Clostridium bartlettii DSM 16795

Site:
position = -89
score = 27.71
sequence = TTAATAACTGTAATG...

Gene: CLOBAR_01486: LSU ribosomal protein L21p
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_03838: LSU ribosomal protein L21p
*
Clostridium butyricum 5521

Site:
position = -80
score = 20.28
sequence = GCACACGTAAGGTTT...

Gene: CBY_4003: LSU ribosomal protein L21p
*
Clostridium hiranonis DSM 13275

Site:
position = -82
score = 31.3
sequence = AATAACTGTAATGCC...

Gene: CLOHIR_01973: LSU ribosomal protein L21p
*
Clostridium leptum DSM 753

Site:
position = -88
score = 24.29
sequence = ATCATTGATAAGCCG...

Gene: CLOLEP_02654: LSU ribosomal protein L21p
*
Clostridium nexile DSM 1787

Site:
position = -73
score = 26.36
sequence = CCGCACAATGAGGTT...

Gene: CLONEX_01673: LSU ribosomal protein L21p
*
Clostridium scindens ATCC 35704

Site:
position = -79
score = 24.55
sequence = CCAGTATGCCGCACA...

Gene: CLOSCI_00483: LSU ribosomal protein L21p
*
Clostridium sp. L2-50

Site:
position = -86
score = 24.41
sequence = TACTAGTGTGCCGCA...

Gene: CLOL250_00205: LSU ribosomal protein L21p
 
Clostridium sp. SS2/1

Gene: CLOSS21_01922: LSU ribosomal protein L21p
LSU ribosomal protein L21p
ysxB
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0509: FIG139598: Potential ribosomal protein
 
Clostridium difficile 630

Gene: CD1162: FIG139598: Potential ribosomal protein
 
Clostridium perfringens ATCC 13124

Gene: CPF_2384: FIG139598: Potential ribosomal protein
 
Clostridium novyi NT

Gene: NT01CX_0080: FIG139598: Potential ribosomal protein
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2988: FIG139598: Potential ribosomal protein
 
Clostridium acetobutylicum ATCC 824

Gene: CAC1258: FIG139598: Potential ribosomal protein
 
Clostridium tetani E88

Gene: CTC02059: FIG139598: Potential ribosomal protein
 
Clostridium phytofermentans ISDg

Gene: null: FIG139598: Potential ribosomal protein
 
Clostridium cellulolyticum H10

Gene: Ccel_1321: FIG139598: Potential ribosomal protein
 
Clostridium kluyveri DSM 555

Gene: CKL_0880: FIG139598: Potential ribosomal protein
 
Clostridium sp. OhILAs

Gene: Clos_1752: FIG139598: Potential ribosomal protein
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01485: FIG139598: Potential ribosomal protein
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_03837: FIG139598: Potential ribosomal protein
 
Clostridium butyricum 5521

Gene: CBY_4004: FIG139598: Potential ribosomal protein
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01974: FIG139598: Potential ribosomal protein
 
Clostridium leptum DSM 753

Gene: CLOLEP_02655: FIG139598: Potential ribosomal protein
 
Clostridium nexile DSM 1787

Gene: CLONEX_01672: FIG139598: Potential ribosomal protein
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00484: FIG139598: Potential ribosomal protein
 
Clostridium sp. L2-50

Gene: CLOL250_00204: FIG139598: Potential ribosomal protein
 
Clostridium sp. SS2/1

Gene: CLOSS21_01921: FIG139598: Potential ribosomal protein
FIG139598: Potential ribosomal protein
rpmA
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0510: LSU ribosomal protein L27p
 
Clostridium difficile 630

Gene: CD1163: LSU ribosomal protein L27p
 
Clostridium perfringens ATCC 13124

Gene: CPF_2383: LSU ribosomal protein L27p
 
Clostridium novyi NT

Gene: NT01CX_0079: LSU ribosomal protein L27p
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2987: LSU ribosomal protein L27p
 
Clostridium acetobutylicum ATCC 824

Gene: CAC1259: LSU ribosomal protein L27p
 
Clostridium tetani E88

Gene: CTC02058: LSU ribosomal protein L27p
 
Clostridium phytofermentans ISDg

Gene: null: LSU ribosomal protein L27p
 
Clostridium cellulolyticum H10

Gene: Ccel_1322: LSU ribosomal protein L27p
 
Clostridium kluyveri DSM 555

Gene: CKL_0881: LSU ribosomal protein L27p
 
Clostridium sp. OhILAs

Gene: Clos_1751: LSU ribosomal protein L27p
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01484: LSU ribosomal protein L27p
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_03836: LSU ribosomal protein L27p
 
Clostridium butyricum 5521

Gene: CBY_4005: LSU ribosomal protein L27p
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01975: LSU ribosomal protein L27p
 
Clostridium leptum DSM 753

Gene: CLOLEP_02656: LSU ribosomal protein L27p
 
Clostridium nexile DSM 1787

Gene: CLONEX_01671: LSU ribosomal protein L27p
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00485: LSU ribosomal protein L27p
 
Clostridium sp. L2-50

Gene: CLOL250_00203: LSU ribosomal protein L27p
 
Clostridium sp. SS2/1

Gene: CLOSS21_01920: LSU ribosomal protein L27p
LSU ribosomal protein L27p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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